* installing *source* package 'pleiotest' ...
** this is package 'pleiotest' version '1.1.0'
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 14.2.0'
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp    -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c PleioSeqTestc.cpp -o PleioSeqTestc.o
In file included from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo:26,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:32,
                 from PleioSeqTestc.cpp:2:
D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
  373 |   #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
      |                                                                        ^
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp    -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c RcppExports.cpp -o RcppExports.o
In file included from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo:26,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:32,
                 from RcppExports.cpp:4:
D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
  373 |   #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
      |                                                                        ^
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -fopenmp    -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c getXX_XYc.cpp -o getXX_XYc.o
In file included from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo:26,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:32,
                 from getXX_XYc.cpp:2:
D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
  373 |   #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
      |                                                                        ^
getXX_XYc.cpp: In function 'Rcpp::List getXX_XYc(Rcpp::IntegerVector, Rcpp::List, Rcpp::List, Rcpp::IntegerMatrix, Rcpp::List)':
getXX_XYc.cpp:26:25: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = int; typename arma_scalar_only<eT>::result = int]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
   26 |       if(arma::is_finite(x_i[j])){
      |          ~~~~~~~~~~~~~~~^~~~~~~~
In file included from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo:518:
D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
  167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
      | ^~~~~~~~~
getXX_XYc.cpp:52:25: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
   52 |       if(arma::is_finite(res)){
      |          ~~~~~~~~~~~~~~~^~~~~
D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
  167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
      | ^~~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o pleiotest.dll tmp.def PleioSeqTestc.o RcppExports.o getXX_XYc.o -fopenmp -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lquadmath -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-pleiotest/00new/pleiotest/libs/x64
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pleiotest)