R Under development (unstable) (2025-10-28 r88973 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(plantTracker)
> 
> test_check("plantTracker")
Site: AZ

-- Quadrat: SG2

---- Species: Bouteloua rothrockii
; Calliandra eriophylla

Note: Individuals in year 1927 have a value of 'NA' in the 'survives_tplus1' and 'size_tplus1' columns because 1927 is the last year of sampling in this quadrat.
-- Quadrat: SG4

---- Species: Bouteloua rothrockii
; Calliandra eriophylla

Note: Individuals in year 1927 have a value of 'NA' in the 'survives_tplus1' and 'size_tplus1' columns because 1927 is the last year of sampling in this quadrat.
Site: AZ

-- Quadrat: SG4

---- Species: Bouteloua rothrockii
; Calliandra eriophylla

Note: Individuals in year 1927 have a value of 'NA' in the 'survives_tplus1' and 'size_tplus1' columns because 1927 is the last year of sampling in this quadrat.
Note: The output data.frame from this function is shorter than your input data.frame because demographic data has been aggregated by genet. Because of this, some columns that were present in your input data.frame may no longer be present. If you don't want the output to be aggregated by genet, include the argument 'aggByGenet == FALSE' in your call to trackSpp().
Site: AZ

-- Quadrat: SG2

---- Species: Bouteloua rothrockii
; Calliandra eriophylla

Note: Individuals in year 1927 have a value of 'NA' in the 'survives_tplus1' and 'size_tplus1' columns because 1927 is the last year of sampling in this quadrat.
-- Quadrat: SG4

---- Species: Bouteloua rothrockii
; Calliandra eriophylla

Note: Individuals in year 1927 have a value of 'NA' in the 'survives_tplus1' and 'size_tplus1' columns because 1927 is the last year of sampling in this quadrat.
Note: The output data.frame from this function is shorter than your input data.frame because demographic data has been aggregated by genet. Because of this, some columns that were present in your input data.frame may no longer be present. If you don't want the output to be aggregated by genet, include the argument 'aggByGenet == FALSE' in your call to trackSpp().
Site: AZ

-- Quadrat: SG2

---- Species: Bouteloua rothrockii
; Calliandra eriophylla

Note: Individuals in year 1927 have a value of 'NA' in the 'survives_tplus1' and 'size_tplus1' columns because 1927 is the last year of sampling in this quadrat.
-- Quadrat: SG4

---- Species: Bouteloua rothrockii
; Calliandra eriophylla

Note: Individuals in year 1927 have a value of 'NA' in the 'survives_tplus1' and 'size_tplus1' columns because 1927 is the last year of sampling in this quadrat.
Note: The output data.frame from this function is shorter than your input data.frame because demographic data has been aggregated by genet. Because of this, some columns that were present in your input data.frame may no longer be present. If you don't want the output to be aggregated by genet, include the argument 'aggByGenet == FALSE' in your call to trackSpp().
Site: AZ

-- Quadrat: SG2

---- Species: Heteropogon contortus
; Bouteloua rothrockii
; Ambrosia artemisiifolia
; Calliandra eriophylla

Note: Individuals in year 1927 have a value of 'NA' in the 'survives_tplus1' and 'size_tplus1' columns because 1927 is the last year of sampling in this quadrat.
-- Quadrat: SG4

---- Species: Bouteloua rothrockii
; Ambrosia artemisiifolia
; Calliandra eriophylla

Note: Individuals in year 1927 have a value of 'NA' in the 'survives_tplus1' and 'size_tplus1' columns because 1927 is the last year of sampling in this quadrat.
Note: The output data.frame from this function is shorter than your input data.frame because demographic data has been aggregated by genet. Because of this, some columns that were present in your input data.frame may no longer be present. If you don't want the output to be aggregated by genet, include the argument 'aggByGenet == FALSE' in your call to trackSpp().
Site: AZ

-- Quadrat: SG4

---- Species: Bouteloua rothrockii
Note: Individuals in year 1927 have a value of 'NA' in the 'survives_tplus1' and 'size_tplus1' columns because 1927 is the last year of sampling in this quadrat.
Site: AZ

-- Quadrat: SG2

---- Species: Bouteloua rothrockii
Note: Individuals in year 1927 have a value of 'NA' in the 'survives_tplus1' and 'size_tplus1' columns because 1927 is the last year of sampling in this quadrat.
-- Quadrat: SG4

---- Species: Bouteloua rothrockii
Note: Individuals in year 1927 have a value of 'NA' in the 'survives_tplus1' and 'size_tplus1' columns because 1927 is the last year of sampling in this quadrat.
Note: The output data.frame from this function is shorter than your input data.frame because demographic data has been aggregated by genet. Because of this, some columns that were present in your input data.frame may no longer be present. If you don't want the output to be aggregated by genet, include the argument 'aggByGenet == FALSE' in your call to trackSpp().
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 481 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 481 ]
> 
> proc.time()
   user  system elapsed 
  15.39    0.54   15.92