* using log directory ‘/srv/hornik/tmp/CRAN_pretest/planningML.Rcheck’ * using R Under development (unstable) (2025-10-03 r88899) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.7 (3+b1) Debian flang-new version 19.1.7 (3+b1) * running under: Debian GNU/Linux forky/sid * using session charset: UTF-8 * checking for file ‘planningML/DESCRIPTION’ ... OK * this is package ‘planningML’ version ‘1.0.2’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [4s/4s] OK * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘planningML’ can be installed ... [8s/8s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s/2s] OK * checking whether the package can be loaded with stated dependencies ... [2s/2s] OK * checking whether the package can be unloaded cleanly ... [2s/2s] OK * checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK * checking whether the namespace can be unloaded cleanly ... [2s/2s] OK * checking loading without being on the library search path ... [2s/2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [12s/12s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [173s/173s] NOTE Examples with CPU (user + system) or elapsed time > 5s user system elapsed featureselection 170.052 0.62 170.767 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [6s/6s] ERROR Error(s) in re-building vignettes: ... --- re-building ‘User_manual_for_planningML.Rmd’ using rmarkdown Quitting from User_manual_for_planningML.Rmd:161-165 [unnamed-chunk-15] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `auc()`: ! length(x) == length(unique(x)) is not TRUE --- Backtrace: ▆ 1. └─planningML::samplesize(...) 2. └─base::replicate(...) 3. └─base::sapply(...) 4. └─base::lapply(X = X, FUN = FUN, ...) 5. └─planningML (local) FUN(X[[i]], ...) 6. └─planningML (local) HCT.simulation(...) 7. └─MESS::auc(x = unique_roc_data$x, y = unique_roc_data$y, type = "spline") 8. └─base::stopifnot(length(x) == length(unique(x))) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'User_manual_for_planningML.Rmd' failed with diagnostics: length(x) == length(unique(x)) is not TRUE --- failed re-building ‘User_manual_for_planningML.Rmd’ SUMMARY: processing the following file failed: ‘User_manual_for_planningML.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE