Package check result: OK Changes to worse in reverse depends: Package: ProjectTemplate Check: tests New result: ERROR Running ‘run-all.R’ [11s/27s] Running ‘testthat.R’ [10s/26s] Running the tests in ‘tests/run-all.R’ failed. Complete output: > library(testthat) > > test_check("ProjectTemplate") Loading required package: ProjectTemplate Loading required package: digest Loading required package: tibble Project name: test_project2f42ac45c901e5 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2f42ac20f4a343 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2f42ac13af1327 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project2f42ac13af1327 version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData dummy 999 Configuration for project: test_project2f42ac13af1327 version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData Additional custom config present for this project: Objects to clear from memory: config helper.function project.info Project name: test_project2f42ac7bcebc5e Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: foo.reader.R Running helper script: helpers.R Autoloading data Loading data set: example Creating cache entry from global environment: example Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Following objects not in memory: Objects to clear from memory: xxxx Project name: test_project2f42ac689c7c74 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: helper.function project.info Clearing cache for project: test_project2f42ac689c7c74 Clearing cache for project: test_project2f42ac2a5b9b23 Objects to clear from memory: xxx Project name: test_project2f42ac2a5b9b23 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from CODE: xxxx Objects to clear from memory: config project.info Objects to clear from memory: project.info Objects to clear from memory: yyy Following objects not in memory: xxx Following objects not in memory: xxx Variables not cleared: config No objects to clear Objects to clear from memory: .yyy helper.function project.info Project name: test_project2f42ac6e02dc23 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2f42ac6e02dc23 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project2f42ac2a64c66 Project name: test_project2f42ace34a36d Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2f42ac12540142 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! Current Directory: test_project2f42ac58656ff7 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project2f42ac58656ff7 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project22f42ac26b9a3d9 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Objects to clear from memory: config helper.function project.info No objects to clear Objects to clear from memory: config file2f42ac542cf393 helper.function project.info Creating cache entry from CODE: test_data Current Directory: test_project2f42ac1c699ecb is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run load.project() Current Directory: test_project2f42ac1c699ecb is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run clear.cache() again. Current Directory: test_project2f42ac1c699ecb is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run cache() again. Current Directory: test_project2f42ac1c699ecb is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run reload.project() again. Current Directory: test_project2f42ac1c699ecb is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run test.project() again. Current Directory: test_project2f42ac1c699ecb is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run stub.tests() again. Current Directory: test_project2f42ac1c699ecb is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run project.config() Project name: test_project2f42ac3b47d752 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: Thumbs Loading required namespace: RSQLite Creating cache entry from global environment: var_to_cache Loading required package: data.table 01-test_data.py start 01-test_data.py finish 02-test_data.py start ['1', '20'] ['2', '30'] ['3', '40'] Python data exists in the environment y 02-test_data.py finish Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file contained unused entries which have been removed. The unused entries are: Migrating project configuration [1] FALSE Migrating project configuration [1] TRUE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Project name: test_project2f42ac51084dc8 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: .Random.seed config helper.function project.info Project name: test_project2f42ac6e622f5c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2f42ac6e622f5c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2f42acfbf185c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2f42acfbf185c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2f42ac34f84eb8 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2f42ac34f84eb8 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2f42ac7d7bad0a Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2f42acd1a16e3 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2f42acd1a16e3 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project2f42acee296fe Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2f42acee296fe Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2f42ac13098736 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2f42ac13098736 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project2f42ac68a4a641 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2f42ac68a4a641 Loading project configuration Objects to clear from memory: config helper.function project.info Project name: test_project2f42ac17d07f25 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2f42ac17d07f25 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Loading required package: qs qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103 Creating cache entry from global environment: cache.qs Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Loading table: example_30a Loading table: example_30b Loading table: example_31a Loading table: example_31b Loading table: example_28 re-encoding from CP1252 re-encoding from CP1252 Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22 Objects to clear from memory: config helper.function project.info Items in cache will not be cleared Use reload.project(reset=TRUE) to clear cache also Objects to clear from memory: helper.function project.info z Reloading Project ... Project name: test_project2f42ac7ef8e282 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading cached data set: z Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info x y z Project name: test_project2f42ac4c88ce8e Loading project configuration Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2f42ac76093713 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2f42ac55699564 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: file_not_in_full_template Translating data.frame to tibble: file_not_in_full_template Creating cache entry from global environment: file_not_in_full_template Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R [1] FALSE [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ── `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning. [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] Error: Test failures Execution halted Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ProjectTemplate) Loading required package: digest Loading required package: tibble > > test_check("ProjectTemplate") Project name: test_project2f57687ca37bd4 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2f57682dfe2d51 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2f57681d5f6f57 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project2f57681d5f6f57 version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData dummy 999 Configuration for project: test_project2f57681d5f6f57 version 0.11.0 data_loading TRUE data_loading_header TRUE data_ignore cache_loading TRUE recursive_loading FALSE munging TRUE logging FALSE logging_level INFO load_libraries FALSE libraries reshape2, plyr, tidyverse, stringr, lubridate as_factors FALSE tables_type tibble attach_internal_libraries FALSE cache_loaded_data TRUE sticky_variables NONE underscore_variables TRUE cache_file_format RData Additional custom config present for this project: Objects to clear from memory: config helper.function project.info Project name: test_project2f5768167075e9 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: foo.reader.R Running helper script: helpers.R Autoloading data Loading data set: example Creating cache entry from global environment: example Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Following objects not in memory: Objects to clear from memory: xxxx Project name: test_project2f5768758041c1 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: helper.function project.info Clearing cache for project: test_project2f5768758041c1 Clearing cache for project: test_project2f576839457788 Objects to clear from memory: xxx Project name: test_project2f576839457788 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Creating cache entry from CODE: xxxx Objects to clear from memory: config project.info Objects to clear from memory: project.info Objects to clear from memory: yyy Following objects not in memory: xxx Following objects not in memory: xxx Variables not cleared: config No objects to clear Objects to clear from memory: .yyy helper.function project.info Project name: test_project2f576815cffaa Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2f576815cffaa Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Configuration for project: test_project2f57681c058b75 Project name: test_project2f576869b0a0b5 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2f57681bf937ff Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! == Testing 1.R ================================================================= [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] Done! Current Directory: test_project2f576872660ad7 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project2f576872660ad7 is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Directory: test_project22f5768426a421a is a ProjectTemplate directory Cannot create a new project inside an existing one Please change to another directory and re-run create.project() Objects to clear from memory: config helper.function project.info No objects to clear Objects to clear from memory: config file2f576864a866cb helper.function project.info Creating cache entry from CODE: test_data Current Directory: test_project2f57684ddb2b1e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run load.project() Current Directory: test_project2f57684ddb2b1e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run clear.cache() again. Current Directory: test_project2f57684ddb2b1e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run cache() again. Current Directory: test_project2f57684ddb2b1e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run reload.project() again. Current Directory: test_project2f57684ddb2b1e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run test.project() again. Current Directory: test_project2f57684ddb2b1e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Change to a valid ProjectTemplate directory and run stub.tests() again. Current Directory: test_project2f57684ddb2b1e is not a valid ProjectTemplate directory because one or more mandatory directories are missing. If you believe you are in a ProjectTemplate directory and seeing this message in error, try running migrate.project(). migrate.project() will ensure the ProjectTemplate structure is consistent with your version of ProjectTemplate. Please change to correct directory and re-run project.config() Project name: test_project2f57682e8749db Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: Thumbs Loading required namespace: RSQLite Creating cache entry from global environment: var_to_cache Loading required package: data.table 01-test_data.py start 01-test_data.py finish 02-test_data.py start ['1', '20'] ['2', '30'] ['3', '40'] Python data exists in the environment y 02-test_data.py finish Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. version, data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. data_loading_header, data_ignore, logging_level, tables_type, attach_internal_libraries, cache_loaded_data, sticky_variables, underscore_variables, cache_file_format There is a new config item called cache_loaded_data which auto-caches data after it has been loaded from the data directory. This has been switched off for this project in case it breaks your scripts. However you can switch it on manually by editing global.dcf data_tables has been renamed tables_type. It can take the value 'tibble', 'data_table', or 'data_frame. If data_tables is TRUE, tables_type will be set to 'data_table', otherwise the default 'data_frame' will be used. if you wish a different default set it manually by editing global.dcf. Future new projects will use 'tibble' by default. Migrating project configuration [1] FALSE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file contained unused entries which have been removed. The unused entries are: Migrating project configuration [1] FALSE Migrating project configuration [1] TRUE Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: tables_type Project name: test_project2f57681514d224 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: .Random.seed config helper.function project.info Project name: test_project2f57687e675c17 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2f57687e675c17 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2f576873af340d Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2f576873af340d Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2f576825dddd62 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2f576825dddd62 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2f5768724368bd Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2f5768450e782c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2f5768450e782c Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project2f5768260282a3 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2f5768260282a3 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Project name: test_project2f5768677bb35f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2f5768677bb35f Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Objects to clear from memory: config helper.function project.info Project name: test_project2f5768428cd555 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2f5768428cd555 Loading project configuration Objects to clear from memory: config helper.function project.info Project name: test_project2f57684f8ccd39 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2f57684f8ccd39 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info Loading required package: qs qs 0.27.3. Announcement: https://github.com/qsbase/qs/issues/103 Creating cache entry from global environment: cache.qs Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Creating cache entry from global environment: xxxx Migrating project configuration [1] FALSE Your existing project configuration in globals.dcf does not contain up to date configuration settings in this version 0.11.0 of ProjectTemplate. They will be added automatically during migration, but you should review afterward. Your config.dcf file was missing entries and defaults have been used. The missing entries are: cache_loaded_data Loading table: example_30a Loading table: example_30b Loading table: example_31a Loading table: example_31b Loading table: example_28 re-encoding from CP1252 re-encoding from CP1252 Objects to clear from memory: .Random.seed config helper.function project.info test test_data12 test_data22 Objects to clear from memory: config helper.function project.info Items in cache will not be cleared Use reload.project(reset=TRUE) to clear cache also Objects to clear from memory: helper.function project.info z Reloading Project ... Project name: test_project2f576846f3f52 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading cached data set: z Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Objects to clear from memory: config helper.function project.info x y z Project name: test_project2f5768439b205f Loading project configuration Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2f576811bb74be Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R Project name: test_project2f57682f524fb3 Loading project configuration Autoloading helper functions Running helper script: globals.R Running helper script: helpers.R Autoloading data Loading data set: file_not_in_full_template Translating data.frame to tibble: file_not_in_full_template Creating cache entry from global environment: file_not_in_full_template Munging data Running preprocessing script: 01-A.R Sourcing R script: 01-A.R [1] FALSE [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-readers.R:940:3'): Example 35: PPM Support with .ppm Extension ── `ppm.reader(data.file, filename, variable.name)` did not throw the expected warning. [ FAIL 1 | WARN 215 | SKIP 0 | PASS 909 ] Error: Test failures Execution halted