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> # This file is part of the testthat package setup.
> # It runs all tests in the testthat directory.
> 
> library(testthat)
> library(piglet)
PIgLET version: 1.2.0 New feature was added! A confidence level to the genotype inference. Check the news for more details To cite package 'piglet' in publications use:

  Peres A, Lees W, Rodriguez O, Lee N, Polak P, Hope R, Kedmi M,
  Collins A, Ohlin M, Kleinstein S, Watson C, Yaari G (2023). "IGHV
  allele similarity clustering improves genotype inference from
  adaptive immune receptor repertoire sequencing data." _Nucleic Acid
  Research_, E86. doi:10.1093/nar/gkad603
  <https://doi.org/10.1093/nar/gkad603>.

A BibTeX entry for LaTeX users is

  @Article{,
    title = {IGHV allele similarity clustering improves genotype inference from adaptive immune receptor repertoire sequencing data},
    author = {Ayelet Peres and William Lees and Oscar Rodriguez and Noah Lee and Pazit Polak and Ronen Hope and Meirav Kedmi and Andrew Collins and Mats Ohlin and Steven Kleinstein and Corey Watson and Gur Yaari},
    year = {2023},
    doi = {10.1093/nar/gkad603},
    journal = {Nucleic Acid Research},
    number = {51},
    pages = {E86},
  }


> 
> test_check("piglet")
[ FAIL 0 | WARN 0 | SKIP 7 | PASS 67 ]

══ Skipped tests (7) ═══════════════════════════════════════════════════════════
• On CRAN (7): 'test-clustering.R:40:3', 'test-community.R:40:3',
  'test-distance.R:4:3', 'test-inferAlleleClusters.R:4:3',
  'test-inferAlleleClusters.R:29:3', 'test-inferAlleleClusters.R:104:3',
  'test-plots.R:4:3'

[ FAIL 0 | WARN 0 | SKIP 7 | PASS 67 ]
> 
> proc.time()
   user  system elapsed 
  13.95    1.67   15.60