installing dependencies ‘canaper’, ‘hillR’, ‘nullcat’ also installing the dependencies ‘maptpx’, ‘predicts’, ‘assertr’, ‘phyloregion’ begin installing package ‘maptpx’ begin installing package ‘predicts’ begin installing package ‘assertr’ begin installing package ‘hillR’ begin installing package ‘nullcat’ * installing *source* package ‘assertr’ ... ** this is package ‘assertr’ version ‘3.0.1’ ** package ‘assertr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (assertr) * installing *source* package ‘hillR’ ... ** this is package ‘hillR’ version ‘0.5.2’ ** package ‘hillR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hillR) * installing *source* package ‘maptpx’ ... ** this is package ‘maptpx’ version ‘1.9-7’ ** package ‘maptpx’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-11) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUjmTq0/R.INSTALL31738c1d2390d8/maptpx/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c latools.c -o latools.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rhelp.c -o rhelp.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c topics.c -o topics.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o maptpx.so init.o latools.o rhelp.o topics.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUjmTq0/R.INSTALL31738c1d2390d8/maptpx/src' installing to /home/hornik/tmp/CRAN_special_noSuggests/Library/00LOCK-maptpx/00new/maptpx/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (maptpx) * installing *source* package ‘nullcat’ ... ** this is package ‘nullcat’ version ‘0.1.0’ ** package ‘nullcat’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-11) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmph0XJ93/R.INSTALL3173923e2a2189/nullcat/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c c0cat.cpp -o c0cat.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c curvecat.cpp -o curvecat.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c r0cat.cpp -o r0cat.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c swapcat.cpp -o swapcat.o swapcat.cpp: In function ‘void swapcat_block_vertical(nullcat::CatState&, Rcpp::IntegerMatrix*, int, int, int, int)’: swapcat.cpp:107:28: warning: ‘ia’ may be used uninitialized [-Wmaybe-uninitialized] 107 | (*idx)(r2, c1) = ia; | ~~~~~~~~~~~~~~~^~~~ swapcat.cpp:88:11: note: ‘ia’ was declared here 88 | int ia, ib, ic, id; | ^~ swapcat.cpp:108:28: warning: ‘ib’ may be used uninitialized [-Wmaybe-uninitialized] 108 | (*idx)(r2, c2) = ib; | ~~~~~~~~~~~~~~~^~~~ swapcat.cpp:88:15: note: ‘ib’ was declared here 88 | int ia, ib, ic, id; | ^~ swapcat.cpp:105:28: warning: ‘ic’ may be used uninitialized [-Wmaybe-uninitialized] 105 | (*idx)(r1, c1) = ic; | ~~~~~~~~~~~~~~~^~~~ swapcat.cpp:88:19: note: ‘ic’ was declared here 88 | int ia, ib, ic, id; | ^~ swapcat.cpp:106:28: warning: ‘id’ may be used uninitialized [-Wmaybe-uninitialized] 106 | (*idx)(r1, c2) = id; | ~~~~~~~~~~~~~~~^~~~ swapcat.cpp:88:23: note: ‘id’ was declared here 88 | int ia, ib, ic, id; | ^~ swapcat.cpp: In function ‘void swapcat_block_horizontal(nullcat::CatState&, Rcpp::IntegerMatrix*, int, int, int, int)’: swapcat.cpp:57:28: warning: ‘ia’ may be used uninitialized [-Wmaybe-uninitialized] 57 | (*idx)(r1, c2) = ia; | ~~~~~~~~~~~~~~~^~~~ swapcat.cpp:39:11: note: ‘ia’ was declared here 39 | int ia, ib, ic, id; | ^~ swapcat.cpp:56:28: warning: ‘ib’ may be used uninitialized [-Wmaybe-uninitialized] 56 | (*idx)(r1, c1) = ib; | ~~~~~~~~~~~~~~~^~~~ swapcat.cpp:39:15: note: ‘ib’ was declared here 39 | int ia, ib, ic, id; | ^~ swapcat.cpp:59:28: warning: ‘ic’ may be used uninitialized [-Wmaybe-uninitialized] 59 | (*idx)(r2, c2) = ic; | ~~~~~~~~~~~~~~~^~~~ swapcat.cpp:39:19: note: ‘ic’ was declared here 39 | int ia, ib, ic, id; | ^~ swapcat.cpp:58:28: warning: ‘id’ may be used uninitialized [-Wmaybe-uninitialized] 58 | (*idx)(r2, c1) = id; | ~~~~~~~~~~~~~~~^~~~ swapcat.cpp:39:23: note: ‘id’ was declared here 39 | int ia, ib, ic, id; | ^~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tswapcat.cpp -o tswapcat.o tswapcat.cpp: In function ‘bool tswapcat_try_block_vertical(nullcat::CatState&, Rcpp::IntegerMatrix*, int, int, int, int)’: tswapcat.cpp:110:28: warning: ‘ia’ may be used uninitialized [-Wmaybe-uninitialized] 110 | (*idx)(r2, c1) = ia; | ~~~~~~~~~~~~~~~^~~~ tswapcat.cpp:91:11: note: ‘ia’ was declared here 91 | int ia, ib, ic, id; | ^~ tswapcat.cpp:111:28: warning: ‘ib’ may be used uninitialized [-Wmaybe-uninitialized] 111 | (*idx)(r2, c2) = ib; | ~~~~~~~~~~~~~~~^~~~ tswapcat.cpp:91:15: note: ‘ib’ was declared here 91 | int ia, ib, ic, id; | ^~ tswapcat.cpp:108:28: warning: ‘ic’ may be used uninitialized [-Wmaybe-uninitialized] 108 | (*idx)(r1, c1) = ic; | ~~~~~~~~~~~~~~~^~~~ tswapcat.cpp:91:19: note: ‘ic’ was declared here 91 | int ia, ib, ic, id; | ^~ tswapcat.cpp:109:28: warning: ‘id’ may be used uninitialized [-Wmaybe-uninitialized] 109 | (*idx)(r1, c2) = id; | ~~~~~~~~~~~~~~~^~~~ tswapcat.cpp:91:23: note: ‘id’ was declared here 91 | int ia, ib, ic, id; | ^~ tswapcat.cpp: In function ‘bool tswapcat_try_block_horizontal(nullcat::CatState&, Rcpp::IntegerMatrix*, int, int, int, int)’: tswapcat.cpp:58:28: warning: ‘ia’ may be used uninitialized [-Wmaybe-uninitialized] 58 | (*idx)(r1, c2) = ia; | ~~~~~~~~~~~~~~~^~~~ tswapcat.cpp:40:11: note: ‘ia’ was declared here 40 | int ia, ib, ic, id; | ^~ tswapcat.cpp:57:28: warning: ‘ib’ may be used uninitialized [-Wmaybe-uninitialized] 57 | (*idx)(r1, c1) = ib; | ~~~~~~~~~~~~~~~^~~~ tswapcat.cpp:40:15: note: ‘ib’ was declared here 40 | int ia, ib, ic, id; | ^~ tswapcat.cpp:60:28: warning: ‘ic’ may be used uninitialized [-Wmaybe-uninitialized] 60 | (*idx)(r2, c2) = ic; | ~~~~~~~~~~~~~~~^~~~ tswapcat.cpp:40:19: note: ‘ic’ was declared here 40 | int ia, ib, ic, id; | ^~ tswapcat.cpp:59:28: warning: ‘id’ may be used uninitialized [-Wmaybe-uninitialized] 59 | (*idx)(r2, c1) = id; | ~~~~~~~~~~~~~~~^~~~ tswapcat.cpp:40:23: note: ‘id’ was declared here 40 | int ia, ib, ic, id; | ^~ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o nullcat.so RcppExports.o c0cat.o curvecat.o r0cat.o swapcat.o tswapcat.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmph0XJ93/R.INSTALL3173923e2a2189/nullcat/src' installing to /home/hornik/tmp/CRAN_special_noSuggests/Library/00LOCK-nullcat/00new/nullcat/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nullcat) * installing *source* package ‘predicts’ ... ** this is package ‘predicts’ version ‘0.1-19’ ** package ‘predicts’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (predicts) begin installing package ‘phyloregion’ * installing *source* package ‘phyloregion’ ... ** this is package ‘phyloregion’ version ‘1.0.9’ ** package ‘phyloregion’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (phyloregion) begin installing package ‘canaper’ * installing *source* package ‘canaper’ ... ** this is package ‘canaper’ version ‘1.0.1’ ** package ‘canaper’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (canaper) checking phylospatial_1.2.1.tar.gz ... Depends: Package: phylospatial Depends: R (>= 3.5) Imports: ape, sf, stats, terra, utils, vegan Timings: user system elapsed phylospatial 60.911 4.799 67.226 Results: Check status summary: NOTE Source packages 1 Check results summary: phylospatial ... NOTE * checking CRAN incoming feasibility ... [5s/6s] NOTE