Package: cauphy
Check: for code/documentation mismatches
New result: WARNING
  Codoc mismatches from Rd file 'vcov.cauphylm.Rd':
  predict.cauphylm
    Code: function(object, newdata = NULL, se.fit = FALSE, ...)
    Docs: function(object, newdata = NULL, ...)
    Argument names in code not in docs:
      se.fit
    Mismatches in argument names:
      Position: 3 Code: se.fit Docs: ...

Package: cauphy
Check: tests
New result: ERROR
    Running ‘spelling.R’ [0s/0s]
    Running ‘testthat.R’ [43s/43s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > library(testthat)
    > library(cauphy)
    Loading required package: ape
    > 
    > test_check("cauphy")
    [ FAIL 1 | WARN 0 | SKIP 0 | PASS 264 ]
    
    ══ Failed tests ════════════════════════════════════════════════════════════════
    ── Error ('testFitFunctions.R:324:3'): cauphylm helper functions ───────────────
    Error in `logLik(reslmdat)$logLik`: $ operator is invalid for atomic vectors
    Backtrace:
        ▆
     1. └─testthat::expect_equal(logLik(reslmdat)$logLik, 13.296526) at testFitFunctions.R:324:3
     2.   └─testthat::quasi_label(enquo(object), label, arg = "object")
     3.     └─rlang::eval_bare(expr, quo_get_env(quo))
    
    [ FAIL 1 | WARN 0 | SKIP 0 | PASS 264 ]
    Error: Test failures
    Execution halted