Package check result: NOTE

Check: CRAN incoming feasibility, Result: Note_to_CRAN_maintainers
  Maintainer: ‘Klaus Schliep <klaus.schliep@gmail.com>’

Check: examples, Result: NOTE
  Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
  plot.ancestral 5.174  0.056   5.231

Changes to worse in reverse depends:

Package: dowser
Check: examples
New result: ERROR
  Running examples in ‘dowser-Ex.R’ failed
  The error most likely occurred in:
  
  > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
  > ### Name: getTrees
  > ### Title: Estimate lineage tree topologies, branch lengths, and internal
  > ###   node states if desired
  > ### Aliases: getTrees
  > 
  > ### ** Examples
  > 
  > data(ExampleClones)
  > 
  > trees <- getTrees(ExampleClones[10,])
  Warning in getTrees(ExampleClones[10, ]) :
    Tree building failed for clones 3140
  Warning in FUN(X[[i]], ...) : subscript out of bounds
  Error in getTrees(ExampleClones[10, ]) : No trees left!
  Execution halted

Package: dowser
Check: re-building of vignette outputs
New result: ERROR
  Error(s) in re-building vignettes:
    ...
  --- re-building ‘Building-Trees-Vignette.Rmd’ using rmarkdown
  --- finished re-building ‘Building-Trees-Vignette.Rmd’
  
  --- re-building ‘Discrete-Trait-Vignette.Rmd’ using rmarkdown
  --- finished re-building ‘Discrete-Trait-Vignette.Rmd’
  
  --- re-building ‘Germlines-Vignette.Rmd’ using rmarkdown
  --- finished re-building ‘Germlines-Vignette.Rmd’
  
  --- re-building ‘Measurable-Evolution.Rmd’ using rmarkdown
  --- finished re-building ‘Measurable-Evolution.Rmd’
  
  --- re-building ‘Plotting-Trees-Vignette.Rmd’ using rmarkdown
  --- finished re-building ‘Plotting-Trees-Vignette.Rmd’
  
  --- re-building ‘Quickstart-Vignette.Rmd’ using rmarkdown
  
  Quitting from lines 35-57 [unnamed-chunk-1] (Quickstart-Vignette.Rmd)
  Error: processing vignette 'Quickstart-Vignette.Rmd' failed with diagnostics:
  No trees left!
  --- failed re-building ‘Quickstart-Vignette.Rmd’
  
  --- re-building ‘Resolve-Light-Chains-Vignette.Rmd’ using rmarkdown
  --- finished re-building ‘Resolve-Light-Chains-Vignette.Rmd’
  
  --- re-building ‘Sequences-Vignette.Rmd’ using rmarkdown
  --- finished re-building ‘Sequences-Vignette.Rmd’
  
  SUMMARY: processing the following file failed:
    ‘Quickstart-Vignette.Rmd’
  
  Error: Vignette re-building failed.
  Execution halted