R Under development (unstable) (2025-12-13 r89166 ucrt) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(perumammals)
perumammals 0.0.0.1
Taxonomic backbone: Pacheco et al. (2021) | Species: 573
Use pm_backbone_info() for full citation and details
ℹ A orginal version of the mammal checklist may be available. Check https://doi.org/10.15381/rpb.v28i4.21019
> 
> test_check("perumammals")
The species list (splist) contains 1 NA value(s) at position(s): 3. 
These will be excluded from matching.
The species list (splist) should only include binomial names. The following names were submitted at the genus level: 'Tremarctos'
Saving _problems/test-pm_integration-22.R
The species list (splist) should only include binomial names. The following names were submitted at the genus level: 'SPECIES123'
The species list (splist) should only include binomial names. The following names were submitted at the genus level: 'GENUS-SPECIES'
The species list (splist) contains 4 NA value(s) at position(s): 1, 2, 4, 6. 
These will be excluded from matching.
The species list (splist) should only include binomial names. The following names were submitted at the genus level: '', '', ''
Loaded peru_mammals database: 573 species
Classified 50 input names
  Rank 1 (genus): 0
  Rank 2 (binomial): 50

Starting hierarchical matching pipeline...
Node 2 (Genus match): 10 matches
Node 3 (Fuzzy genus): 20 matches
Node 4 (Fuzzy species): 30 matches

-- Validating name format --

-- MATCHING SUMMARY ------------------------------------------------------------

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

The species list (splist) should only include binomial names. The following names were submitted at the genus level: 'AKODON'
The species list (splist) should only include binomial names. The following names were submitted at the genus level: 'PANTHERA'
The species list (splist) should only include binomial names. The following names were submitted at the genus level: 'PANTHERA', 'TREMARCTOS', 'PUMA'
The species list (splist) should only include binomial names. The following names were submitted at the genus level: 'SPECIESUNKNOWN'
Loaded peru_mammals database: 573 species
Classified 1 input names
  Rank 1 (genus): 0
  Rank 2 (binomial): 1

Starting hierarchical matching pipeline...

-- Validating name format --

-- MATCHING SUMMARY ------------------------------------------------------------
The species list (splist) should only include binomial names. The following names were submitted at the genus level: 'EUBALAENA', 'BALAENOPTERA', 'MEGAPTERA', 'LAMA', 'VICUGNA'
[ FAIL 1 | WARN 5 | SKIP 1 | PASS 287 ]

══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1): 'test-pm_dataset.R:157:1'

══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-pm_integration.R:22:5'): Flujo completo de matching funciona end-to-end ──
Expected `original` to equal `matched`.
Differences:
`actual`:   "Oligoryzomys sp. C"
`expected`: "Oligoryzomys sp. c"


[ FAIL 1 | WARN 5 | SKIP 1 | PASS 287 ]
Error:
! Test failures.
Execution halted