* using log directory 'd:/RCompile/CRANincoming/R-devel/perumammals.Rcheck'
* using R Under development (unstable) (2025-12-13 r89166 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'perumammals/DESCRIPTION' ... OK
* this is package 'perumammals' version '0.0.0.1'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Paul E. Santos Andrade <paulefrens@gmail.com>'

New submission

Possibly misspelled words in DESCRIPTION:
  Lista (18:28)
  actualizacion (19:38)
  actualizada (18:34)
  al (18:16)
  biogeographic (23:32)
  de (18:46, 18:63)
  del (19:5)
  diversidad (18:52)
  ecoregions (20:46)
  endemism (20:58)
  et (18:13)
  los (18:66)
  mamiferos (18:70)
  propuesta (19:20)
  su (19:35)
  una (19:16)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'perumammals' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [12s] ERROR
  Running 'testthat.R' [12s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(perumammals)
  perumammals 0.0.0.1
  Taxonomic backbone: Pacheco et al. (2021) | Species: 573
  Use pm_backbone_info() for full citation and details
  ℹ A orginal version of the mammal checklist may be available. Check https://doi.org/10.15381/rpb.v28i4.21019
  > 
  > test_check("perumammals")
  The species list (splist) contains 1 NA value(s) at position(s): 3. 
  These will be excluded from matching.
  The species list (splist) should only include binomial names. The following names were submitted at the genus level: 'Tremarctos'
  Saving _problems/test-pm_integration-22.R
  The species list (splist) should only include binomial names. The following names were submitted at the genus level: 'SPECIES123'
  The species list (splist) should only include binomial names. The following names were submitted at the genus level: 'GENUS-SPECIES'
  The species list (splist) contains 4 NA value(s) at position(s): 1, 2, 4, 6. 
  These will be excluded from matching.
  The species list (splist) should only include binomial names. The following names were submitted at the genus level: '', '', ''
  Loaded peru_mammals database: 573 species
  Classified 50 input names
    Rank 1 (genus): 0
    Rank 2 (binomial): 50
  
  Starting hierarchical matching pipeline...
  Node 2 (Genus match): 10 matches
  Node 3 (Fuzzy genus): 20 matches
  Node 4 (Fuzzy species): 30 matches
  
  -- Validating name format --
  
  -- MATCHING SUMMARY ------------------------------------------------------------
  
  Attaching package: 'dplyr'
  
  The following objects are masked from 'package:stats':
  
      filter, lag
  
  The following objects are masked from 'package:base':
  
      intersect, setdiff, setequal, union
  
  The species list (splist) should only include binomial names. The following names were submitted at the genus level: 'AKODON'
  The species list (splist) should only include binomial names. The following names were submitted at the genus level: 'PANTHERA'
  The species list (splist) should only include binomial names. The following names were submitted at the genus level: 'PANTHERA', 'TREMARCTOS', 'PUMA'
  The species list (splist) should only include binomial names. The following names were submitted at the genus level: 'SPECIESUNKNOWN'
  Loaded peru_mammals database: 573 species
  Classified 1 input names
    Rank 1 (genus): 0
    Rank 2 (binomial): 1
  
  Starting hierarchical matching pipeline...
  
  -- Validating name format --
  
  -- MATCHING SUMMARY ------------------------------------------------------------
  The species list (splist) should only include binomial names. The following names were submitted at the genus level: 'EUBALAENA', 'BALAENOPTERA', 'MEGAPTERA', 'LAMA', 'VICUGNA'
  [ FAIL 1 | WARN 5 | SKIP 1 | PASS 287 ]
  
  ══ Skipped tests (1) ═══════════════════════════════════════════════════════════
  • empty test (1): 'test-pm_dataset.R:157:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-pm_integration.R:22:5'): Flujo completo de matching funciona end-to-end ──
  Expected `original` to equal `matched`.
  Differences:
  `actual`:   "Oligoryzomys sp. C"
  `expected`: "Oligoryzomys sp. c"
  
  
  [ FAIL 1 | WARN 5 | SKIP 1 | PASS 287 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [11s] OK
* checking PDF version of manual ... [13s] OK
* checking HTML version of manual ... [92s] OK
* DONE
Status: 1 ERROR, 1 NOTE