* using log directory 'd:/RCompile/CRANincoming/R-devel/permRand.Rcheck' * using R Under development (unstable) (2025-08-21 r88668 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'permRand/DESCRIPTION' ... OK * this is package 'permRand' version '1.0.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Michelle Mellers ' New submission Non-FOSS package license (use_gpl3_license()) Possibly misspelled words in DESCRIPTION: Found the following (possibly) invalid file URI: URI: michelle.mellers.ctr@usuhs.edu From: man/permRand-package.Rd The Description field should not start with the package name, 'This package' or similar. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'permRand' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... WARNING Non-standard license specification: use_gpl3_license() Standardizable: FALSE BugReports field is not a suitable URL but appears to contain an email address not specified by mailto: nor contained in < > use the Contact field instead * checking top-level files ... NOTE Non-standard file/directory found at top level: 'randBatch.Rproj' * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE allRand: no visible global function definition for '%>%' allRand: no visible global function definition for 'filter' allRand: no visible binding for global variable 'QCsamp' allRand: no visible global function definition for 'group_by' allRand: no visible binding for global variable 'ccID' allRand: no visible global function definition for 'mutate' allRand: no visible global function definition for 'runif' allRand: no visible global function definition for 'ungroup' allRand: no visible global function definition for 'arrange' allRand: no visible binding for global variable 'randW' allRand: no visible global function definition for 'select' allRand: no visible global function definition for 'row_number' allRand: no visible binding for global variable 'caseControl' allRand: no visible global function definition for 'case_when' allRand: no visible binding for global variable 'acrs' allRand: no visible binding for global variable 'rn' allRand: no visible binding for global variable 'batchN' allRand: no visible binding for global variable 'ct' allRand: no visible binding for global variable 'loc' allRand: no visible global function definition for 'rename' allRand: no visible binding for global variable 'loc2' allRandS: no visible global function definition for '%>%' allRandS: no visible global function definition for 'filter' allRandS: no visible binding for global variable 'QCsamp' allRandS: no visible global function definition for 'group_by' allRandS: no visible binding for global variable 'ccID' allRandS: no visible global function definition for 'mutate' allRandS: no visible global function definition for 'runif' allRandS: no visible global function definition for 'ungroup' allRandS: no visible binding for global variable 'studyID' allRandS: no visible global function definition for 'arrange' allRandS: no visible binding for global variable 'randS' allRandS: no visible binding for global variable 'randW' allRandS: no visible global function definition for 'select' allRandS: no visible binding for global variable 'grp' allRandS: no visible binding for global variable 'rand2' allRandS: no visible binding for global variable 'loc' allRandS: no visible binding for global variable '.' allRandS: no visible binding for global variable 'batchN' allRandS: no visible global function definition for 'row_number' assignBatch: no visible global function definition for '%>%' assignBatch: no visible global function definition for 'mutate' batchCount: no visible global function definition for '%>%' batchCount: no visible global function definition for 'arrange' batchCount: no visible binding for global variable 'batchN' batchCount: no visible binding for global variable 'loc' batchCount: no visible global function definition for 'group_by' batchCount: no visible global function definition for 'count' batchCount: no visible global function definition for 'ungroup' batchCount: no visible global function definition for 'mutate' batchCount: no visible global function definition for 'filter' batchCount: no visible binding for global variable 'n' batchCount: no visible binding for global variable 'batchNmax' batchOrd: no visible global function definition for '%>%' batchOrd: no visible global function definition for 'group_by' batchOrd: no visible binding for global variable 'serumID' batchOrd: no visible global function definition for 'mutate' batchOrd: no visible global function definition for 'runif' batchOrd: no visible global function definition for 'ungroup' batchOrd: no visible global function definition for 'arrange' batchOrd: no visible binding for global variable 'ccID' batchOrd: no visible binding for global variable 'randF' batchOrd: no visible global function definition for 'row_number' batchOrd: no visible global function definition for 'select' batchOrd: no visible binding for global variable 'grp' batchOrd: no visible binding for global variable 'rand2' batchOrd: no visible global function definition for 'case_when' batchOrd: no visible binding for global variable 'studyID' batchOrd: no visible binding for global variable 'batchN' batchOrd: no visible binding for global variable 'grpM' batchOrd: no visible global function definition for 'n' batchOrd: no visible global function definition for 'filter' batchOrd: no visible binding for global variable 'cts' batchOrd: no visible binding for global variable 'idL' batchOrd: no visible binding for global variable 'rand3' batchOrd: no visible binding for global variable '.' batchOrd: no visible binding for global variable 'rowN3' batchOrd: no visible binding for global variable 'rowN2' ccsamp: no visible global function definition for '%>%' ccsamp: no visible global function definition for 'mutate' ccsamp: no visible global function definition for 'arrange' ccsamp: no visible binding for global variable 'batchN' ccsamp: no visible binding for global variable 'loc' ccsamp: no visible global function definition for 'filter' ccsamp: no visible binding for global variable 'QCsamp' ccsamp: no visible binding for global variable 'ccID' ccsamp: no visible global function definition for 'group_by' ccsamp: no visible global function definition for 'n' ccsamp: no visible global function definition for 'ungroup' ccsamp: no visible global function definition for 'select' ccsamp: no visible binding for global variable 'total' ccsamp: no visible binding for global variable 'pattern' ccsamp: no visible global function definition for 'row_number' ccsamp: no visible global function definition for 'pivot_wider' ccsamp: no visible binding for global variable 'batchS' ccsamp: no visible binding for global variable 'Batch_A' ccsamp: no visible binding for global variable 'Batch_B' ccsamp: no visible global function definition for 'summarize' ccsamp: no visible binding for global variable '.' ccsamp: no visible binding for global variable 'num' ccsamp: no visible binding for global variable 'ct' ccsamp: no visible global function definition for 'case_when' ccsamp: no visible binding for global variable 'group' ccsamp: no visible global function definition for 'runif' ccsamp: no visible binding for global variable 'rand' ccsamp: no visible global function definition for 'distinct' ccsamp: no visible binding for global variable 'rn' ccsamp: no visible binding for global variable 'serumID' ccsamp: no visible binding for global variable 'rowN' chkAcr: no visible global function definition for '%>%' chkAcr: no visible global function definition for 'arrange' chkAcr: no visible binding for global variable 'batchN' chkAcr: no visible binding for global variable 'loc' chkAcr: no visible global function definition for 'mutate' chkAcr: no visible global function definition for 'filter' chkAcr: no visible binding for global variable 'prob' chkWith: no visible global function definition for '%>%' chkWith: no visible global function definition for 'group_by' chkWith: no visible binding for global variable 'batchN' chkWith: no visible global function definition for 'mutate' chkWith: no visible global function definition for 'row_number' chkWith: no visible global function definition for 'ungroup' chkWith: no visible global function definition for 'filter' chkWith: no visible binding for global variable 'QCsamp' chkWith: no visible binding for global variable 'loc' chkWith: no visible global function definition for 'lag' chkWith: no visible binding for global variable 'ccID' chkWith: no visible global function definition for 'runif' chkWith: no visible binding for global variable 'studyID' chkWith: no visible global function definition for 'case_when' chkWith: no visible global function definition for 'select' chkWith: no visible binding for global variable 'randS1' chkWith: no visible binding for global variable '.' chkWith: no visible global function definition for 'arrange' chkWith: no visible binding for global variable 'randS' chkWith: no visible binding for global variable 'randW' countQC: no visible global function definition for '%>%' countQC: no visible global function definition for 'filter' countQC: no visible binding for global variable 'QCsamp' countQC: no visible global function definition for 'group_by' countQC: no visible binding for global variable 'batchN' countQC: no visible global function definition for 'count' countQC: no visible binding for global variable '.' countQC: no visible global function definition for 'ungroup' countQC: no visible global function definition for 'mutate' countQC: no visible binding for global variable 'n' countQC: no visible global function definition for 'arrange' countQC: no visible binding for global variable 'loc' distFcc: no visible global function definition for '%>%' distFcc: no visible global function definition for 'filter' distFcc: no visible binding for global variable 'QCsamp' distFcc: no visible binding for global variable 'ccID' distFcc: no visible global function definition for 'group_by' distFcc: no visible binding for global variable 'batchN' distFcc: no visible global function definition for 'mutate' distFcc: no visible global function definition for 'n' distFcc: no visible global function definition for 'row_number' distFcc: no visible global function definition for 'ungroup' distFcc: no visible binding for global variable 'count' distFcc: no visible global function definition for 'select' distFcc: no visible binding for global variable 'loc' distFcc: no visible global function definition for 'case_when' distFcc: no visible global function definition for 'arrange' distFcc: no visible global function definition for 'desc' distFcc: no visible binding for global variable 'locO' distFcc: no visible binding for global variable 'countA' distFcc: no visible binding for global variable '.' distFcc: no visible binding for global variable 'dist' distFcc: no visible binding for global variable 'rows' distFcc: no visible global function definition for 'rename' distFcc: no visible binding for global variable 'batchNM' distFcc: no visible binding for global variable 'locM' distFcc: no visible binding for global variable 'countN' distFcc: no visible binding for global variable 'change' distFcc: no visible binding for global variable 'serumID' distFcc: no visible binding for global variable 'loc2' formatRand: no visible global function definition for '%>%' formatRand: no visible binding for global variable '.' formatRand: no visible global function definition for 'mutate' formatRand: no visible binding for global variable 'studyID' formatRand: no visible global function definition for 'select' formatRand: no visible binding for global variable 'serumID' formatRand: no visible binding for global variable 'rack' formatRand: no visible binding for global variable 'event' formatRand: no visible global function definition for 'str_split_i' orderCases: no visible global function definition for '%>%' orderCases: no visible global function definition for 'arrange' orderCases: no visible binding for global variable 'batchN' orderCases: no visible binding for global variable 'loc' orderCases: no visible global function definition for 'mutate' orderCases: no visible global function definition for 'lag' orderCases: no visible binding for global variable 'caseControl' orderCases: no visible global function definition for 'select' orderCases: no visible binding for global variable 'groupO' orderCases: no visible binding for global variable 'groupC' orderCases: no visible global function definition for 'group_by' orderCases: no visible global function definition for 'summarize' orderCases: no visible global function definition for 'ungroup' orderCases: no visible global function definition for 'filter' orderCases: no visible binding for global variable 'groupCm' orderCases: no visible binding for global variable 'lagC' outputLab: no visible global function definition for '%>%' outputLab: no visible global function definition for 'rename' outputLab: no visible binding for global variable 'rack' outputLab: no visible global function definition for 'select' outputLab: no visible global function definition for 'arrange' outputLab: no visible binding for global variable 'batchN' outputLab: no visible binding for global variable 'loc' outputLab: no visible binding for global variable 'studyID' outputLab: no visible binding for global variable 'ccID' outputLab: no visible binding for global variable 'caseControl' outputLab: no visible binding for global variable 'QCsamp' probData: no visible global function definition for '%>%' probData: no visible global function definition for 'group_by' probData: no visible binding for global variable 'batchN' probData: no visible global function definition for 'mutate' probData: no visible global function definition for 'n' probData: no visible global function definition for 'ungroup' probData: no visible binding for global variable 'ccID' probData: no visible global function definition for 'row_number' probData: no visible binding for global variable '.' probData: no visible global function definition for 'case_when' probData: no visible global function definition for 'filter' probData: no visible global function definition for 'arrange' probData: no visible binding for global variable 'ctQC' probData: no visible binding for global variable 'gct' probData: no visible global function definition for 'runif' probData: no visible global function definition for 'desc' probData: no visible binding for global variable 'nQC' probData: no visible binding for global variable 'randQ' probData: no visible global function definition for 'select' probData: no visible binding for global variable 'nBatch' randTest: no visible global function definition for '%>%' randTest: no visible global function definition for 'mutate' randTest: no visible global function definition for 'row_number' randTest: no visible global function definition for 'group_by' randTest: no visible global function definition for 'runif' randTest: no visible global function definition for 'ungroup' randTest: no visible global function definition for 'select' randTest: no visible binding for global variable 'row_number()' randTest: no visible global function definition for 'arrange' randTest: no visible binding for global variable 'rand' randTest: no visible binding for global variable '.' randTest: no visible binding for global variable 'event' randTest: no visible binding for global variable 'rowN' randTest: no visible binding for global variable 'rack' randTest: no visible global function definition for 'rename' randTest: no visible binding for global variable 'serumID' randTest: no visible binding for global variable 'RN' randTest: no visible binding for global variable 'IDm' replaceChr: no visible global function definition for '%>%' replaceChr: no visible global function definition for 'filter' replaceChr: no visible global function definition for 'row_number' replaceChr: no visible global function definition for 'select' replaceChr: no visible binding for global variable 'ccID' replaceChr: no visible binding for global variable '.' replaceChr: no visible global function definition for 'group_by' replaceChr: no visible binding for global variable 'batchN' replaceChr: no visible global function definition for 'mutate' replaceChr: no visible global function definition for 'n' replaceChr: no visible global function definition for 'ungroup' replaceChr: no visible binding for global variable 'ctsCCBT' replaceChr: no visible binding for global variable 'ctsCCBa' replaceChr: no visible binding for global variable 'ctsCCB' replaceChr: no visible global function definition for 'runif' replaceChr: no visible binding for global variable 'randS' replaceChr: no visible binding for global variable 'serumID' replaceChr: no visible global function definition for 'arrange' replaceChr: no visible binding for global variable 'randW' replaceChr: no visible binding for global variable 'prob' replaceChr: no visible global function definition for 'desc' replaceChr: no visible global function definition for 'case_when' replaceChr: no visible binding for global variable 'loc' replaceChr: no visible binding for global variable 'final1' replaceChr: no visible binding for global variable 'final0' swQC: no visible global function definition for '%>%' swQC: no visible global function definition for 'group_by' swQC: no visible binding for global variable 'batchN' swQC: no visible global function definition for 'mutate' swQC: no visible binding for global variable 'loc' swQC: no visible global function definition for 'ungroup' swQC: no visible binding for global variable 'ccID' swQC: no visible global function definition for 'case_when' swQC: no visible global function definition for 'filter' swQC: no visible binding for global variable 'nCh' swQC: no visible binding for global variable 'QCsamp' swQC: no visible binding for global variable 'nGrp' swQC: no visible global function definition for 'select' swQC: no visible binding for global variable 'serumID' swQC: no visible global function definition for 'row_number' swQC: no visible global function definition for 'runif' swQC: no visible global function definition for 'arrange' swQC: no visible binding for global variable 'randS' swQC: no visible binding for global variable '.' swQC: no visible binding for global variable 'rn' swQC: no visible binding for global variable 'nAv' switchR: no visible global function definition for '%>%' switchR: no visible global function definition for 'arrange' switchR: no visible binding for global variable 'batchN' switchR: no visible binding for global variable 'loc' switchR: no visible global function definition for 'mutate' switchR: no visible global function definition for 'row_number' switchR: no visible global function definition for 'select' switchR: no visible binding for global variable 'rack' switchR: no visible global function definition for 'filter' switchR: no visible binding for global variable 'QCsamp' switchR: no visible binding for global variable 'dataI' switchR: no visible binding for global variable '.' switchR: no visible global function definition for 'rename' switchR: no visible binding for global variable 'batchN.y' switchR: no visible binding for global variable 'serumID' switchR: no visible binding for global variable 'batchN.x' switchR: no visible binding for global variable 'studyID' switchR: no visible binding for global variable 'event' switchR: no visible binding for global variable 'ccID' switchR: no visible binding for global variable 'caseControl' switchR: no visible binding for global variable 'outoforder' switchR: no visible global function definition for 'group_by' switchR: no visible global function definition for 'ungroup' switchR: no visible binding for global variable 'maxR' testCCAcross: no visible global function definition for '%>%' testCCAcross: no visible global function definition for 'filter' testCCAcross: no visible binding for global variable 'QCsamp' testCCAcross: no visible global function definition for 'arrange' testCCAcross: no visible binding for global variable 'batchN' testCCAcross: no visible binding for global variable 'loc' testCCAcross: no visible global function definition for 'mutate' testCCAcross: no visible global function definition for 'group_by' testCCAcross: no visible global function definition for 'ungroup' testCCAcross: no visible binding for global variable 'minloc' testCCAcross: no visible binding for global variable 'minbatch' testCCAcross: no visible binding for global variable 'maxloc' testCCAcross: no visible binding for global variable 'maxbatch' testCCAcross: no visible global function definition for 'case_when' testCCAcross: no visible binding for global variable 'prob' testCCAcross: no visible binding for global variable 'ccID' testDataLoc: no visible global function definition for '%>%' testDataLoc: no visible global function definition for 'select' testDataLoc: no visible binding for global variable 'event' testDataLoc: no visible binding for global variable 'studyID' testDataQC: no visible global function definition for '%>%' testDataQC: no visible global function definition for 'mutate' testDataQC: no visible global function definition for 'runif' testDataQC: no visible binding for global variable '.' testDataQC: no visible global function definition for 'xtabs' testDataQC: no visible global function definition for 'filter' testDataQC: no visible binding for global variable 'Freq' testDataQC: no visible global function definition for 'rename' testDataQC: no visible binding for global variable 'serumID' testDataQC: no visible global function definition for 'case_when' testDataQC: no visible global function definition for 'select' testDataQC: no visible binding for global variable 'serumID2n' testDataQC: no visible binding for global variable 'serumID2o' testDataUB: no visible global function definition for '%>%' testDataUB: no visible global function definition for 'mutate' testDataUB: no visible global function definition for 'row_number' testDataUB: no visible binding for global variable 'studyID' testDataUB: no visible global function definition for 'runif' testDataUB: no visible global function definition for 'case_when' testDataUB: no visible global function definition for 'select' testDataUB: no visible binding for global variable 'time1' testDataUB: no visible binding for global variable 'time2' testDataUB: no visible binding for global variable 'time3' testDataUB: no visible binding for global variable 'time4' testDataUB: no visible binding for global variable 'co' testDataUB: no visible global function definition for 'group_by' testDataUB: no visible global function definition for 'pivot_longer' testDataUB: no visible binding for global variable 'exist' testDataUB: no visible global function definition for 'ungroup' testDataUB: no visible global function definition for 'filter' testDataUB: no visible binding for global variable 'event' testDataUB: no visible global function definition for 'xtabs' testDataUB: no visible binding for global variable 'Freq' testDataUB: no visible global function definition for 'rename' testDataUB: no visible binding for global variable 'serumID' testDataUB: no visible binding for global variable '.' testDataUB: no visible binding for global variable 'serumID2n' testDataUB: no visible binding for global variable 'serumID2o' testPair: no visible global function definition for '%>%' testPair: no visible global function definition for 'filter' testPair: no visible binding for global variable 'QCsamp' testPair: no visible global function definition for 'arrange' testPair: no visible binding for global variable 'ccID' testPair: no visible binding for global variable 'batchN' testPair: no visible binding for global variable 'loc' testPair: no visible global function definition for 'group_by' testPair: no visible global function definition for 'mutate' testPair: no visible global function definition for 'lag' testPair: no visible global function definition for 'case_when' testPair: no visible binding for global variable 'probs' testQCmatch: no visible global function definition for '%>%' testQCmatch: no visible global function definition for 'filter' testQCmatch: no visible binding for global variable 'QCsamp' testQCmatch: no visible global function definition for 'arrange' testQCmatch: no visible binding for global variable 'batchN' testQCmatch: no visible binding for global variable 'ccID' testQCmatch: no visible global function definition for 'group_by' testQCmatch: no visible global function definition for 'mutate' testQCmatch: no visible global function definition for 'n' testQCmatch: no visible global function definition for 'ungroup' testQCmatch: no visible global function definition for 'select' testQCmatch: no visible binding for global variable 'countMatch' testQCmatch: no visible binding for global variable 'countBatch' testQCmatch: no visible global function definition for 'distinct' testQCmatch: no visible binding for global variable '.' toadd_m1: no visible global function definition for '%>%' toadd_m1: no visible global function definition for 'filter' toadd_m1: no visible binding for global variable 'dataI' toadd_m1: no visible global function definition for 'group_by' toadd_m1: no visible binding for global variable 'batchN' toadd_m1: no visible global function definition for 'mutate' toadd_m1: no visible global function definition for 'n' toadd_m1: no visible global function definition for 'ungroup' toadd_m1: no visible binding for global variable 'ccID' toadd_m1: no visible global function definition for 'case_when' toadd_m1: no visible global function definition for 'select' toadd_m1: no visible binding for global variable 'nBatch' toadd_m1: no visible binding for global variable 'nGrp' toadd_m1: no visible binding for global variable '.' toadd_m1: no visible global function definition for 'arrange' toadd_m2: no visible global function definition for '%>%' toadd_m2: no visible global function definition for 'filter' toadd_m2: no visible binding for global variable 'dataI' toadd_m2: no visible global function definition for 'mutate' toadd_m2: no visible global function definition for 'row_number' toadd_m2: no visible global function definition for 'group_by' toadd_m2: no visible binding for global variable 'ccID' toadd_m2: no visible global function definition for 'n' toadd_m2: no visible global function definition for 'runif' toadd_m2: no visible global function definition for 'ungroup' toadd_m2: no visible binding for global variable 'rowN' toadd_m2: no visible global function definition for 'select' toadd_m2: no visible binding for global variable 'nGrp' toadd_m2: no visible binding for global variable '.' toadd_m2: no visible global function definition for 'arrange' toadd_m2: no visible global function definition for 'desc' toadd_m2: no visible binding for global variable 'serumID' toadd_m2: no visible binding for global variable 'randS' toadd_m2: no visible binding for global variable 'randW' toadd_m2: no visible binding for global variable 'numL' toadd_m2: no visible binding for global variable 'rn' toadd_m2: no visible binding for global variable 'rs' toadd_m2: no visible binding for global variable 'nGrp.x' toadd_m2: no visible binding for global variable 'nGrp.y' toadd_m2: no visible binding for global variable 'batchN.x' toadd_m3: no visible global function definition for '%>%' toadd_m3: no visible global function definition for 'select' toadd_m3: no visible binding for global variable 'batchN' toadd_m3: no visible binding for global variable 'ccID' toadd_m3: no visible binding for global variable 'nGrp' toadd_m3: no visible global function definition for 'mutate' toadd_m3: no visible global function definition for 'arrange' toadd_m3: no visible binding for global variable 'count' toadd_m3: no visible global function definition for 'filter' toadd_m3: no visible global function definition for 'group_by' toadd_m3: no visible binding for global variable 'batchN.x' toadd_m3: no visible global function definition for 'row_number' toadd_m3: no visible global function definition for 'ungroup' toadd_m3: no visible binding for global variable '.' toadd_m3: no visible binding for global variable 'serumID' toadd_m3: no visible binding for global variable 'nBatch' toadd_m3: no visible global function definition for 'rename' toadd_m3: no visible binding for global variable 'matchT' toadd_m3: no visible binding for global variable 'dataI' uniqueID: no visible global function definition for '%>%' uniqueID: no visible global function definition for 'xtabs' uniqueID: no visible global function definition for 'filter' uniqueID: no visible binding for global variable 'Freq' Undefined global functions or variables: %>% . Batch_A Batch_B Freq IDm QCsamp RN acrs arrange batchN batchN.x batchN.y batchNM batchNmax batchS caseControl case_when ccID change co count countA countBatch countMatch countN ct ctQC cts ctsCCB ctsCCBT ctsCCBa dataI desc dist distinct event exist filter final0 final1 gct group groupC groupCm groupO group_by grp grpM idL lag lagC loc loc2 locM locO matchT maxR maxbatch maxloc minbatch minloc mutate n nAv nBatch nCh nGrp nGrp.x nGrp.y nQC num numL outoforder pattern pivot_longer pivot_wider prob probs rack rand rand2 rand3 randF randQ randS randS1 randW rename rn rowN rowN2 rowN3 row_number row_number() rows rs runif select serumID serumID2n serumID2o str_split_i studyID summarize time1 time2 time3 time4 total ungroup xtabs Consider adding importFrom("stats", "dist", "filter", "lag", "runif", "xtabs") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... WARNING Undocumented arguments in Rd file 'formatRand.Rd' 'QCdata' Documented arguments not in \usage in Rd file 'formatRand.Rd': 'QCData' Undocumented arguments in Rd file 'outputLab.Rd' 'blind' Documented arguments not in \usage in Rd file 'outputLab.Rd': 'Blind' Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ERROR Running examples in 'permRand-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: outputLab > ### Title: Output labels. > ### Aliases: outputLab > > ### ** Examples > > blind <- outputLab(dataOut=serumRand,blind=1,origP=0,maxRows=9,maxCols=9,newPack=1) Error in dataOut %>% select(-rack, -row, -col) : could not find function "%>%" Calls: outputLab Execution halted * checking for unstated dependencies in vignettes ... NOTE 'library' or 'require' call not declared from: 'randBatch' * checking package vignettes ... OK * checking re-building of vignette outputs ... ERROR Error(s) in re-building vignettes: --- re-building 'BatchProc.Rmd' using rmarkdown Quitting from BatchProc.Rmd:23-26 [setup] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `library()`: ! there is no package called 'randBatch' --- Backtrace: ▆ 1. └─base::library(randBatch) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'BatchProc.Rmd' failed with diagnostics: there is no package called 'randBatch' --- failed re-building 'BatchProc.Rmd' SUMMARY: processing the following file failed: 'BatchProc.Rmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [13s] OK * checking HTML version of manual ... OK * DONE Status: 2 ERRORs, 2 WARNINGs, 4 NOTEs