* using log directory 'd:/RCompile/CRANincoming/R-devel/performance.Rcheck' * using R Under development (unstable) (2024-03-19 r86153 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'performance/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'performance' version '0.11.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... [12s] Note_to_CRAN_maintainers Maintainer: 'Daniel Lüdecke ' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'performance' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [24s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... WARNING Missing link or links in Rd file 'check_overdispersion.Rd': 'simulate_residual' Missing link or links in Rd file 'check_zeroinflation.Rd': 'simulate_residual' See section 'Cross-references' in the 'Writing R Extensions' manual. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking R/sysdata.rda ... OK * checking examples ... [11s] ERROR Running examples in 'performance-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: check_overdispersion > ### Title: Check overdispersion (and underdispersion) of GL(M)M's > ### Aliases: check_overdispersion check_overdispersion.performance_simres > > ### ** Examples > > ## Don't show: > if (getRversion() >= "4.0.0" && require("glmmTMB", quietly = TRUE)) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf + ## End(Don't show) + + library(glmmTMB) + data(Salamanders) + m <- glm(count ~ spp + mined, family = poisson, data = Salamanders) + check_overdispersion(m) + + m <- glmmTMB( + count ~ mined + spp + (1 | site), + family = poisson, + data = Salamanders + ) + check_overdispersion(m) + ## Don't show: + }) # examplesIf > library(glmmTMB) > data(Salamanders) > m <- glm(count ~ spp + mined, family = poisson, data = Salamanders) > check_overdispersion(m) # Overdispersion test dispersion ratio = 2.946 Pearson's Chi-Squared = 1873.710 p-value = < 0.001 Overdispersion detected. > m <- glmmTMB(count ~ mined + spp + (1 | site), family = poisson, data = Salamanders) * checking for unstated dependencies in 'tests' ... OK * checking tests ... ERROR Running 'testthat.R' Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(performance) > > test_check("performance") Starting 2 test processes Error in `private$handle_error()`: ! testthat subprocess exited in file `test-check_collinearity.R` Caused by error: ! R session crashed with exit code -1073741819 Backtrace: ▆ 1. └─testthat::test_check("performance") 2. └─testthat::test_dir(...) 3. └─testthat:::test_files(...) 4. └─testthat:::test_files_parallel(...) 5. ├─withr::with_dir(...) 6. │ └─base::force(code) 7. ├─testthat::with_reporter(...) 8. │ └─base::tryCatch(...) 9. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 10. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 11. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 12. └─testthat:::parallel_event_loop_chunky(queue, reporters, ".") 13. └─queue$poll(Inf) 14. └─base::lapply(...) 15. └─testthat (local) FUN(X[[i]], ...) 16. └─private$handle_error(msg, i) 17. └─rlang::abort(...) Execution halted * checking PDF version of manual ... [15s] OK * checking HTML version of manual ... [12s] OK * DONE Status: 2 ERRORs, 1 WARNING