downloading reverse dependencies ‘c060’ trying URL 'file:///data/Repositories/CRAN/src/contrib/c060_0.5-0.tar.gz' Content type 'unknown' length 360945 bytes (352 KB) ================================================== installing dependencies ‘CoxBoost’, ‘mlegp’, ‘pamr’, ‘penalizedSVM’, ‘peperr’, ‘SGL’ begin installing package ‘CoxBoost’ begin installing package ‘mlegp’ begin installing package ‘SGL’ begin installing package ‘pamr’ begin installing package ‘peperr’ * installing *source* package ‘SGL’ ... ** this is package ‘SGL’ version ‘1.3’ ** package ‘SGL’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-15) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0v7296/R.INSTALLe6d3f26a43c92/SGL/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Coxfit.cpp -o Coxfit.o Coxfit.cpp: In function ‘void VCalc(int*, int*, int*, int*, int*, double*, double*)’: Coxfit.cpp:16:10: warning: unused variable ‘w’ [-Wunused-variable] 16 | double w; | ^ Coxfit.cpp:17:10: warning: unused variable ‘r’ [-Wunused-variable] 17 | double r; | ^ Coxfit.cpp: In function ‘void gradCalc(int*, int*, int*, int*, int*, int*, int*, double*, double*, double*)’: Coxfit.cpp:56:10: warning: unused variable ‘r’ [-Wunused-variable] 56 | double r; | ^ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o SGL.so Coxfit.o registerDynamicSymbol.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0v7296/R.INSTALLe6d3f26a43c92/SGL/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-SGL/00new/SGL/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SGL) * installing *source* package ‘mlegp’ ... ** this is package ‘mlegp’ version ‘3.1.10’ ** package ‘mlegp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYmh6PR/R.INSTALLe6d433f37c028/mlegp/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -D__useR__ -DMEXP=607 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c SFMT.c -o SFMT.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -D__useR__ -DMEXP=607 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lbfgs.c -o lbfgs.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -D__useR__ -DMEXP=607 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mlegp.c -o mlegp.o In file included from mlegp.c:9: matrix_vector.h:360:13: warning: ‘printVector’ defined but not used [-Wunused-function] 360 | static void printVector(const char *fmt, const double *b, int m) | ^~~~~~~~~~~ matrix_vector.h:346:13: warning: ‘printPackedMatrix’ defined but not used [-Wunused-function] 346 | static void printPackedMatrix(const char *fmt, const double *a, int n) | ^~~~~~~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -D__useR__ -DMEXP=607 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mlegp_init.c -o mlegp_init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -D__useR__ -DMEXP=607 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nelder_mead_min.c -o nelder_mead_min.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -D__useR__ -DMEXP=607 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c print.c -o print.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o mlegp.so SFMT.o lbfgs.o mlegp.o mlegp_init.o nelder_mead_min.o print.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYmh6PR/R.INSTALLe6d433f37c028/mlegp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mlegp/00new/mlegp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlegp) begin installing package ‘penalizedSVM’ * installing *source* package ‘pamr’ ... ** this is package ‘pamr’ version ‘1.57’ ** package ‘pamr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pamr) * installing *source* package ‘peperr’ ... ** this is package ‘peperr’ version ‘1.7’ ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyAHEgw/R.INSTALLe6d4514f65cf9/peperr/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_init_peperr.c -o R_init_peperr.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c noinf_R.c -o noinf_R.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o peperr.so R_init_peperr.o noinf_R.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyAHEgw/R.INSTALLe6d4514f65cf9/peperr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-peperr/00new/peperr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (peperr) * installing *source* package ‘CoxBoost’ ... ** this is package ‘CoxBoost’ version ‘1.5.1’ ** package ‘CoxBoost’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-15) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpNx6iCl/R.INSTALLe6d3e55cff9d4/CoxBoost/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c find_best.c -o find_best.o find_best.c: In function ‘find_best_candidate’: find_best.c:121:21: warning: ‘max_score_beta_delta’ may be used uninitialized [-Wmaybe-uninitialized] 121 | *min_beta_delta = max_score_beta_delta; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ find_best.c:38:30: note: ‘max_score_beta_delta’ was declared here 38 | double score, max_score, max_score_beta_delta; | ^~~~~~~~~~~~~~~~~~~~ find_best.c:120:16: warning: ‘max_score_index’ may be used uninitialized [-Wmaybe-uninitialized] 120 | *min_index = max_score_index; | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ find_best.c:39:9: note: ‘max_score_index’ was declared here 39 | int max_score_index; | ^~~~~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o CoxBoost.so find_best.o init.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpNx6iCl/R.INSTALLe6d3e55cff9d4/CoxBoost/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-CoxBoost/00new/CoxBoost/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CoxBoost) * installing *source* package ‘penalizedSVM’ ... ** this is package ‘penalizedSVM’ version ‘1.2.0’ ** package ‘penalizedSVM’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (penalizedSVM) checking peperr_1.7.tar.gz ... checking c060_0.5-0.tar.gz ... Depends: Package: peperr Depends: snowfall, survival, methods Timings: user system elapsed peperr 42.734 5.009 49.593 Results: Check status summary: OK Source packages 1 Reverse depends 1 Check results summary: peperr ... OK rdepends_c060 ... OK