if (!interactive()) pdf(NULL) test_that("conjugate single value T works", { s1 <- c( 43.8008289810423, 44.6084228775479, 68.9524219823026, 77.442231894233, 45.2302703709121, 53.8005757403944, 33.8292993277826, 59.7018653972819, 57.8433869136181, 52.8224097917938 ) s2 <- c( 84.7860854952772, 53.38097452501, 52.352235256613, 49.2369049504088, 72.7625716991815, 62.6982283802374, 61.2347595388326, 45.298878516913, 39.6312400911458, 66.9134811003628 ) set.seed(123) out <- conjugate( s1 = s1, s2 = s2, method = "t", priors = list(mu = 40, n = 1, s2 = 100), plot = TRUE, rope_range = c(-8, 8), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "unequal", support = seq(20, 100, length.out = 10000) ) expect_equal(out$summary$post.prob, 0.4135897, tolerance = 1e-6) expect_equal(out$summary$rope_prob, 0.7396922, tolerance = 1e-6) expect_equal(names(out), c("summary", "posterior", "plot")) df <- data.frame(value = c(s1, s2), group = rep(c("a", "b"), each = 10)) out2 <- conjugate( value ~ group, df, method = "t", priors = NULL, plot = FALSE, rope_range = c(-8, 8), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "lesser" ) expect_equal(out2$summary$post.prob, 0.3278761, tolerance = 1e-6) }) test_that("conjugate single value gaussian works", { s1 <- c( 43.8008289810423, 44.6084228775479, 68.9524219823026, 77.442231894233, 45.2302703709121, 53.8005757403944, 33.8292993277826, 59.7018653972819, 57.8433869136181, 52.8224097917938 ) s2 <- c( 62.2654459133762, 66.6863571733485, 61.2951438574251, 62.0014980341704, 44.0772327229333, 56.169510174076, 71.1378538738675, 55.7547954794673, 52.4202653287144, 63.3091644583334, 49.263640809148, 63.2460598779059, 60.3804997092304, 25.1210401427447, 42.6563192857856 ) set.seed(123) out <- conjugate( s1 = s1, s2 = s2, method = "gaussian", priors = NULL, plot = TRUE, rope_range = c(-10, 10), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "equal", support = NULL ) expect_equal(names(out), c("summary", "posterior", "plot")) }) test_that("conjugate single value beta works", { s1 <- c( 0.703503634559075, 0.511635134690101, 0.632190260438834, 0.353931888757961, 0.221420395118864, 0.513410161844891, 0.34422446087923, 0.377469570817219, 0.553479714127415, 0.610722823397796, 0.642879912798542, 0.276682168393891, 0.469471347132478, 0.444690242008423, 0.21701860450406, 0.362069754559641, 0.324136767421681, 0.776072763733466, 0.678539925827321, 0.230328895808406 ) s2 <- c( 0.609522707465377, 0.485478489613084, 0.38771181119892, 0.605383942021798, 0.657651014793296, 0.650853576978649, 0.556595652577583, 0.719495963439006, 0.695092908314064, 0.769699311988927, 0.665722925603491, 0.651953500947315, 0.523204344509775, 0.736962689122744, 0.607863983829372, 0.703483180709229, 0.418954761865872, 0.556556033829364, 0.617343726804053, 0.522669623038004 ) set.seed(123) out <- conjugate( s1 = s1, s2 = s2, method = "beta", priors = NULL, plot = TRUE, rope_range = c(-0.1, 0.1), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "equal" ) expect_equal(out$summary$post.prob, 0.02229246, tolerance = 1e-6) expect_equal(out$summary$rope_prob, 0.1351534, tolerance = 1e-6) expect_equal(names(out), c("summary", "posterior", "plot")) expect_error(conjugate(s1 = c(s1, -0.1), s2 = c(s2, 1.1), method = "beta")) }) test_that("conjugate single value lognormal works", { set.seed(123) s1 <- rlnorm(100, log(130), log(1.3)) s2 <- rlnorm(100, log(100), log(2)) out <- conjugate( s1 = s1, s2 = s2, method = "lognormal", priors = NULL, plot = TRUE, rope_range = c(-1, 1), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "equal", support = NULL ) expect_equal(out$summary$post.prob, 0.5527433, tolerance = 1e-6) expect_equal(out$summary$rope_prob, 0.7356477, tolerance = 1e-6) expect_equal(names(out), c("summary", "posterior", "plot")) }) test_that("conjugate single value lognormal2 works", { set.seed(123) s1 <- rlnorm(100, log(130), log(1.3)) s2 <- rlnorm(100, log(100), log(2)) out <- conjugate( s1 = s1, s2 = s2, method = "lognormal2", priors = NULL, plot = TRUE, rope_range = c(-1, 1), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "equal", support = NULL ) expect_equal(out$summary$post.prob, 1.069935e-09, tolerance = 1e-6) expect_equal(out$summary$rope_prob, 0, tolerance = 1e-6) expect_equal(names(out), c("summary", "posterior", "plot")) }) test_that("conjugate single value poisson works", { set.seed(123) s1 <- rpois(20, 10) s2 <- rpois(20, 8) out <- conjugate( s1 = s1, s2 = s2, method = "poisson", priors = NULL, plot = TRUE, rope_range = c(-1, 1), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "equal" ) expect_equal(out$summary$post.prob, 0.09622298, tolerance = 1e-6) expect_equal(out$summary$rope_prob, 0.05594877, tolerance = 1e-6) expect_equal(names(out), c("summary", "posterior", "plot")) expect_error( conjugate( s1 = c(s1, 1.5), s2 = s2, method = "poisson", priors = NULL, plot = TRUE, rope_range = c(-1, 1), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "equal" ) ) }) test_that("conjugate single value negative binomial works", { set.seed(123) s1 <- rnbinom(20, 10, 0.5) s2 <- rnbinom(20, 10, 0.25) suppressWarnings( out <- conjugate( s1 = s1, s2 = s2, method = "negbin", priors = NULL, plot = TRUE, rope_range = c(-0.5, 0.5), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "equal" ) ) expect_equal(out$summary$post.prob, 6.569111e-09, tolerance = 1e-6) expect_equal(out$summary$rope_prob, 1, tolerance = 1e-6) expect_equal(names(out), c("summary", "posterior", "plot")) expect_error( conjugate( c(0.5, 0.1, 1, 1.1), method = "negbin" ) ) }) test_that("conjugate single value binomial works", { set.seed(123) s1 <- list(successes = c(15, 14, 16, 11), trials = 20) s2 <- list(successes = c(10, 9, 12, 10), trials = 20) out <- conjugate( s1 = s1, s2 = s2, method = "binomial", priors = NULL, plot = TRUE, rope_range = c(-0.5, 0.5), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "equal" ) expect_equal(out$summary$post.prob, 0.08529131, tolerance = 1e-6) expect_equal(out$summary$rope_prob, 1, tolerance = 1e-6) expect_equal(names(out), c("summary", "posterior", "plot")) expect_error( .conj_binomial_formatter(c(1, -1)) ) expect_error( .conj_binomial_formatter(c(1, 1, 1)) ) expect_message( out <- .conj_binomial_formatter( list( c(1, 1, 4), c(3, 3, 10) ) ) ) expect_equal(names(out), c("successes", "trials")) }) test_that("conjugate single value bernoulli works", { set.seed(123) s1 <- sample(c(TRUE, FALSE), 10, replace = TRUE, prob = c(0.4, 0.6)) s2 <- sample(c(TRUE, FALSE), 10, replace = TRUE, prob = c(0.7, 0.3)) out <- conjugate( s1 = s1, s2 = s2, method = "bernoulli", priors = NULL, plot = TRUE, rope_range = c(-0.5, 0.5), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "equal" ) expect_equal(out$summary$post.prob, 0.3412209, tolerance = 1e-6) expect_equal(out$summary$rope_prob, 0.914504, tolerance = 1e-6) expect_equal(names(out), c("summary", "posterior", "plot")) expect_error( conjugate(c(1, 2, 3), method = "bernoulli") ) }) test_that("conjugate single value pareto works", { set.seed(123) s1 <- extraDistr::rpareto(10, 2, 1) s2 <- extraDistr::rpareto(10, 3, 1) out <- conjugate( s1 = s1, s2 = s2, method = "pareto", priors = NULL, plot = TRUE, rope_range = c(-0.5, 0.5), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "equal" ) expect_equal(out$summary$post.prob, 0.8643824, tolerance = 1e-6) expect_equal(out$summary$rope_prob, 0.01584092, tolerance = 1e-6) expect_equal(names(out), c("summary", "posterior", "plot")) }) test_that("conjugate single value uniform works", { set.seed(123) s1 <- runif(10, 0, 10) s2 <- runif(10, 0, 13) out <- conjugate( s1 = s1, s2 = s2, method = "uniform", priors = NULL, plot = TRUE, rope_range = c(-0.5, 0.5), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "equal" ) expect_equal(out$summary$post.prob, 0.05305783, tolerance = 1e-6) expect_equal(out$summary$rope_prob, 0, tolerance = 1e-6) expect_equal(names(out), c("summary", "posterior", "plot")) }) test_that("conjugate single value von mises (1) works", { set.seed(123) s1 <- brms::rvon_mises(10, 0, 2) s2 <- brms::rvon_mises(10, 0, 2) out <- conjugate( s1 = s1, s2 = s2, method = "vonmises", priors = list(mu = 0, kappa = 0.5, boundary = c(-pi, pi)), plot = TRUE, rope_range = c(-0.5, 0.5), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "equal" ) expect_equal(out$summary$post.prob, 0.4736915, tolerance = 1e-6) expect_equal(out$summary$rope_prob, 0.255814, tolerance = 1e-6) expect_equal(names(out), c("summary", "posterior", "plot")) out2 <- conjugate( s1 = s1, s2 = s2, method = "vonmises", priors = list(mu = 0), plot = TRUE, rope_range = c(-0.5, 0.5), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "equal" ) expect_error(conjugate( s1 = rnorm(10, 10, 1), s2 = rnorm(10, 10, 1), method = "vonmises", priors = NULL, plot = FALSE, rope_range = c(-0.5, 0.5), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "equal" )) }) test_that("conjugate single value von mises (2) works", { set.seed(123) s1 <- rnorm(10, 50, 6) s2 <- rnorm(10, 60, 10) out <- conjugate( s1 = s1, s2 = s2, method = "vonmises2", priors = list(mu = 0, boundary = c(0, 110)), plot = TRUE, rope_range = c(-0.5, 0.5), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "equal" ) expect_equal(out$summary$post.prob, 0.4529312, tolerance = 1e-6) expect_equal(out$summary$rope_prob, 0.01999775, tolerance = 1e-3) expect_equal(names(out), c("summary", "posterior", "plot")) expect_error(conjugate( s1 = s1, s2 = s2, method = "vonmises2", priors = NULL, plot = FALSE, rope_range = c(-0.5, 0.5), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "equal" )) }) test_that("conjugate single value gamma works", { set.seed(123) s1 <- rgamma(10, 2, 1) s2 <- rgamma(10, 1, 1) out <- conjugate( s1 = s1, s2 = s2, method = "gamma", priors = NULL, plot = TRUE, rope_range = c(-0.5, 0.5), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "equal" ) expect_equal(out$summary$post.prob, 0.1474759, tolerance = 1e-6) expect_equal(out$summary$rope_prob, 0.2627795, tolerance = 1e-6) expect_equal(names(out), c("summary", "posterior", "plot")) }) test_that("conjugate single value exponential works", { set.seed(123) s1 <- rexp(10, 1.2) s2 <- rexp(10, 1) out <- conjugate( s1 = s1, s2 = s2, method = "exponential", priors = NULL, plot = TRUE, rope_range = c(-0.5, 0.5), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "equal" ) expect_equal(out$summary$post.prob, 0.3536306, tolerance = 1e-6) expect_equal(out$summary$rope_prob, 0.3370408, tolerance = 1e-6) expect_equal(names(out), c("summary", "posterior", "plot")) }) test_that("conjugate single value lognormal vs gaussian", { set.seed(123) s1 <- rlnorm(100, log(70), log(2)) s2 <- rnorm(100, 4, 1) out <- conjugate( s1 = s1, s2 = s2, method = c("lognormal", "gaussian"), priors = list( list(mu = 3, sd = 5), list(mu = 5, n = 1, s2 = 2) ), plot = FALSE, rope_range = c(-1, 1), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "equal", support = NULL ) expect_equal(out$summary$post.prob, 0.6857498, tolerance = 1e-3) expect_equal(out$summary$rope_prob, 0.7193574, tolerance = 1e-3) expect_equal(unlist(lapply(out$posterior, function(p) { names(p) })), c("mu", "sd", "lognormal_sigma", "mu", "n", "s2")) expect_equal(names(out), c("summary", "posterior")) }) test_that("single value bivariate conjugate uniform works", { set.seed(123) s1 <- runif(10, 1, 10) s2 <- runif(10, -1, 15) out <- conjugate( s1 = s1, s2 = s2, method = "bivariate_uniform", priors = NULL, plot = TRUE, rope_range = c(-1, 1), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "equal", support = NULL ) expect_s3_class(out$plot, "ggplot") expect_equal(nrow(out$summary), 2) expect_equal(length(out$posterior), 2) expect_equal(names(out$posterior[[1]]), c("scale", "location_l", "location_u")) expect_equal(names(out), c("summary", "posterior", "plot")) out2 <- conjugate( s1 = s1, method = "bivariate_uniform", priors = NULL, plot = TRUE, rope_range = c(-1, 1), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "equal", support = NULL ) expect_equal(names(out2), c("summary", "posterior", "plot")) set.seed(123) s1 <- runif(10, -15, -7) s2 <- runif(10, -10, -5) out <- conjugate( s1 = s1, s2 = s2, method = "bivariate_uniform", priors = list(location_l = -10, location_u = -8, scale = 1), plot = TRUE, rope_range = c(-1, 1), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "equal", support = NULL ) expect_s3_class(out$plot, "ggplot") expect_equal(nrow(out$summary), 2) expect_equal(length(out$posterior), 2) expect_equal(names(out$posterior[[1]]), c("scale", "location_l", "location_u")) expect_equal(names(out), c("summary", "posterior", "plot")) }) test_that("bivariate conjugate gaussian works", { set.seed(123) s1 <- rnorm(10, 20, 5) s2 <- rnorm(10, 25, 5) out <- conjugate( s1 = s1, s2 = s2, method = "bivariate_gaussian", priors = NULL, plot = TRUE, rope_range = c(-1, 1), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "equal", support = NULL ) expect_s3_class(out$plot, "ggplot") expect_equal(nrow(out$summary), 2) expect_equal(length(out$posterior), 2) expect_equal(names(out$posterior[[1]]), c("mu", "sd", "a", "b")) expect_equal(names(out), c("summary", "posterior", "plot")) }) test_that("bivariate conjugate lognormal works", { set.seed(123) s1 <- rlnorm(10, log(20), 0.25) s2 <- rlnorm(10, log(25), 0.4) out <- conjugate( s1 = s1, s2 = s2, method = "bivariate_lognormal", priors = NULL, plot = TRUE, rope_range = c(-1, 1), rope_ci = 0.89, cred.int.level = 0.89, hypothesis = "equal", support = NULL ) expect_s3_class(out$plot, "ggplot") expect_equal(nrow(out$summary), 2) expect_equal(length(out$posterior), 2) expect_equal(names(out$posterior[[1]]), c("mu", "sd", "a", "b")) expect_equal(names(out), c("summary", "posterior", "plot")) })