* using log directory 'd:/RCompile/CRANincoming/R-devel/pcutils.Rcheck' * using R Under development (unstable) (2024-01-07 r85787 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'pcutils/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'pcutils' version '0.2.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Peng Chen ' Uses the superseded packages: 'doSNOW', 'snow' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'pcutils' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [10s] NOTE Olympic_rings: no visible binding for global variable 'radius' Olympic_rings: no visible binding for global variable 'x' Olympic_rings: no visible binding for global variable 'y' Olympic_rings: no visible binding for global variable 'color' Olympic_rings: no visible binding for global variable 'start' Olympic_rings: no visible binding for global variable 'end' areaplot: no visible binding for global variable 'variable2' chunlian: no visible binding for global variable 'x' chunlian: no visible binding for global variable 'y' chunlian: no visible binding for global variable 'label' df2link: no visible global function definition for 'na.omit' download2: no visible global function definition for 'download.file' ggheatmap: no visible global function definition for 'hclust' ggheatmap: no visible global function definition for 'dist' give_you_a_rose: no visible global function definition for 'colorRampPalette' group_test: no visible global function definition for '%dopar%' lm_coefficients: no visible global function definition for 'model.frame' lm_coefficients: no visible global function definition for 'lm' lm_coefficients: no visible global function definition for 'as.formula' lm_coefficients: no visible global function definition for 'coef' multireg: no visible global function definition for 'model.frame' multireg: no visible global function definition for 'cor' multireg: no visible global function definition for 'lm' multitest: no visible global function definition for 'combn' my_voronoi_treemap: no visible global function definition for 'setNames' plot.coefficients: no visible binding for global variable 'adj_r2' sample_map: no visible binding for global variable 'df2_sf' set_pcutils_config: no visible global function definition for 'setNames' tidai: no visible global function definition for 'setNames' triangp: no visible binding for global variable 'tmp' Undefined global functions or variables: %dopar% adj_r2 as.formula coef color colorRampPalette combn cor df2_sf dist download.file end hclust label lm model.frame na.omit radius setNames start tmp variable2 x y Consider adding importFrom("grDevices", "colorRampPalette") importFrom("stats", "as.formula", "coef", "cor", "dist", "end", "hclust", "lm", "model.frame", "na.omit", "setNames", "start") importFrom("utils", "combn", "download.file") to your NAMESPACE file. * checking Rd files ... NOTE checkRd: (-1) my_circo.Rd:20: Lost braces; missing escapes or markup? 20 | \item{pal}{a vector of colors, you can get from here too.{RColorBrewer::brewer.pal(5,"Set2")} {ggsci::pal_aaas()(5)}} | ^ checkRd: (-1) my_circo.Rd:20: Lost braces; missing escapes or markup? 20 | \item{pal}{a vector of colors, you can get from here too.{RColorBrewer::brewer.pal(5,"Set2")} {ggsci::pal_aaas()(5)}} | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [21s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... [14s] OK * checking HTML version of manual ... [12s] OK * DONE Status: 3 NOTEs