* using log directory 'd:/RCompile/CRANincoming/R-devel/pcalg.Rcheck'
* using R Under development (unstable) (2024-09-06 r87103 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'pcalg/DESCRIPTION' ... OK
* this is package 'pcalg' version '2.7-12'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... Note_to_CRAN_maintainers
Maintainer: 'Markus Kalisch <kalisch@stat.math.ethz.ch>'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'pcalg' can be installed ... OK
* used C compiler: 'gcc.exe (GCC) 13.2.0'
* used C++ compiler: 'g++.exe (GCC) 13.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [25s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [28s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [79s] OK
  Running 'test_LINGAM.R'
  Running 'test_addBgKnowledge.R'
  Running 'test_adjustment.R'
  Running 'test_ages.R'
  Running 'test_amat2dag.R'
  Running 'test_arges.R'
  Running 'test_backdoor.R'
  Comparing 'test_backdoor.Rout' to 'test_backdoor.Rout.save' ... OK
  Running 'test_bicscore.R'
  Running 'test_causalEffect.R'
  Running 'test_coercion.R'
  Running 'test_compareGraphs.R'
  Running 'test_dag2cpdag.R'
  Running 'test_dag2essgraph.R'
  Running 'test_displayAmat.R'
  Running 'test_dsep.R'
  Running 'test_dsepAM.R'
  Running 'test_dsepAMTest.R'
  Running 'test_fci.R'
  Running 'test_fciPlus.R'
  Running 'test_gSquareBin.R'
  Running 'test_gSquareDis.R'
  Running 'test_gac.R'
  Running 'test_getNextSet.R'
  Running 'test_gies.R'
  Running 'test_ida.R'
  Running 'test_idaFast.R'
  Running 'test_isValidGraph.R'
  Running 'test_jointIda.R'
  Running 'test_mat2targets.R'
  Running 'test_optAdjSet.R'
  Running 'test_opttarget.R'
  Running 'test_pag2anc.R'
  Running 'test_pag2conf.R'
  Running 'test_pag2edge.R'
  Running 'test_pc.R'
  Running 'test_pcSelect.R'
  Running 'test_pcalg2dagitty.R'
  Running 'test_pcorOrder.R'
  Running 'test_pdag2allDags.R'
  Running 'test_pdag2dag.R'
  Running 'test_possDeAn.R'
  Running 'test_randDAG.R'
  Running 'test_randomDAG.R'
  Running 'test_rfci.R'
  Running 'test_rmvDAG.R'
  Running 'test_searchAM.R'
  Running 'test_shd.R'
  Running 'test_skeleton.R'
  Running 'test_udag2pag.R'
  Running 'test_udag2pdag.R'
  Running 'test_wgtMatrix.R'
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [34s] OK
* checking PDF version of manual ... [17s] OK
* checking HTML version of manual ... [18s] OK
* DONE
Status: OK