* using log directory ‘/srv/hornik/tmp/CRAN/pcalg.Rcheck’
* using R Under development (unstable) (2024-02-11 r85891)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (5)
    Debian flang-new version 17.0.6 (5)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘pcalg/DESCRIPTION’ ... OK
* this is package ‘pcalg’ version ‘2.7-11’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/5s] NOTE
Maintainer: ‘Markus Kalisch <kalisch@stat.math.ethz.ch>’

Days since last update: 6
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pcalg’ can be installed ... [42s/42s] OK
* used C compiler: ‘Debian clang version 17.0.6 (5)’
* used C++ compiler: ‘Debian clang version 17.0.6 (5)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [19s/19s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [21s/21s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [63s/62s] OK
  Running ‘test_LINGAM.R’ [1s/1s]
  Running ‘test_addBgKnowledge.R’ [1s/1s]
  Running ‘test_adjustment.R’ [2s/2s]
  Running ‘test_ages.R’ [1s/1s]
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  Running ‘test_arges.R’ [1s/1s]
  Running ‘test_backdoor.R’ [3s/3s]
  Comparing ‘test_backdoor.Rout’ to ‘test_backdoor.Rout.save’ ... OK
  Running ‘test_bicscore.R’ [1s/1s]
  Running ‘test_causalEffect.R’ [1s/1s]
  Running ‘test_coercion.R’ [1s/1s]
  Running ‘test_compareGraphs.R’ [1s/1s]
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  Running ‘test_pc.R’ [1s/1s]
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  Running ‘test_pcalg2dagitty.R’ [1s/1s]
  Running ‘test_pcorOrder.R’ [1s/1s]
  Running ‘test_pdag2allDags.R’ [1s/1s]
  Running ‘test_pdag2dag.R’ [1s/1s]
  Running ‘test_possDeAn.R’ [1s/1s]
  Running ‘test_randDAG.R’ [2s/2s]
  Comparing ‘test_randDAG.Rout’ to ‘test_randDAG.Rout.save’ ...1a2,16
> R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
> Copyright (C) 2023 The R Foundation for Statistical Computing
> Platform: x86_64-pc-linux-gnu (64-bit)
> 
> R ist freie Software und kommt OHNE JEGLICHE GARANTIE.
> Sie sind eingeladen, es unter bestimmten Bedingungen weiter zu verbreiten.
> Tippen Sie 'license()' or 'licence()' für Details dazu.
> 
> R ist ein Gemeinschaftsprojekt mit vielen Beitragenden.
> Tippen Sie 'contributors()' für mehr Information und 'citation()',
> um zu erfahren, wie R oder R packages in Publikationen zitiert werden können.
> 
> Tippen Sie 'demo()' für einige Demos, 'help()' für on-line Hilfe, oder
> 'help.start()' für eine HTML Browserschnittstelle zur Hilfe.
> Tippen Sie 'q()', um R zu verlassen.
174a190
> Lade nötiges Paket: Matrix
  Running ‘test_randomDAG.R’ [1s/1s]
  Running ‘test_rfci.R’ [2s/2s]
  Running ‘test_rmvDAG.R’ [1s/1s]
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  Running ‘test_shd.R’ [1s/1s]
  Running ‘test_skeleton.R’ [2s/2s]
  Running ‘test_udag2pag.R’ [1s/1s]
  Running ‘test_udag2pdag.R’ [3s/3s]
  Running ‘test_wgtMatrix.R’ [1s/1s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [16s/16s] OK
* checking PDF version of manual ... [6s/6s] OK
* checking HTML version of manual ... [3s/3s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE