R Under development (unstable) (2024-02-05 r85863 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(pcalg)
> source(system.file(package="Matrix", "test-tools-1.R", mustWork=TRUE))
Loading required package: tools
> ##--> showProc.time(), assertError(), relErrV(), ...
> 
> set.seed(234)
> p <- 10
> nreps <- 30
> resG <- resP <- rep(FALSE,nreps)
> for (i in 1:nreps) {
+   ## generate and draw random DAG :
+   myDAG <- randomDAG(p, prob = 0.3)
+   mycor <- cov2cor(trueCov(myDAG))
+   amat <- wgtMatrix(myDAG)
+   amat[amat!=0] <- 1
+   amat <- amat + t(amat)
+   amat[amat!=0] <- 1
+ 
+   ## Gaussian
+   suffStat <- list(C = cov2cor(trueCov(myDAG)), n = 10^9)
+   indepTest <- gaussCItest
+ 
+   resU <- skeleton(suffStat, indepTest, 0.99, p = p,
+       method = ifelse(i < nreps/2, "stable", "stable.fast"))
+ 
+   resG[i] <- all(as(resU@graph,"matrix") == amat)
+   resP[i] <- all(resU@pMax[as(resU@graph,"matrix") == TRUE] < 0.99)
+ }
> showProc.time()
Time (user system elapsed): 1.17 0.06 1.24 
> 
> if (!all(resG)) stop("Test skeleton wrong: Some skeleton was not found correctly!")
> if (!all(resP)) stop("Test skeleton wrong: There was an inconsistency with an entry in pMax!")
> 
> (doExtras <- pcalg:::doExtras())
[1] FALSE
> if(!doExtras && !interactive()) q("no")
> proc.time()
   user  system elapsed 
   2.23    0.20    2.45