* installing *source* package 'pcadapt' ...
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.2.0'
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -DARMA_DONT_PRINT_OPENMP_WARNING -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.5/mmapcharr/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -DARMA_DONT_PRINT_OPENMP_WARNING -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.5/mmapcharr/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c af.cpp -o af.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -DARMA_DONT_PRINT_OPENMP_WARNING -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.5/mmapcharr/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c bed-acc-xptr.cpp -o bed-acc-xptr.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -DARMA_DONT_PRINT_OPENMP_WARNING -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.5/mmapcharr/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c bed2matrix.cpp -o bed2matrix.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -DARMA_DONT_PRINT_OPENMP_WARNING -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.5/mmapcharr/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c clumping.cpp -o clumping.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -DARMA_DONT_PRINT_OPENMP_WARNING -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.5/mmapcharr/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c linear-regression.cpp -o linear-regression.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -DARMA_DONT_PRINT_OPENMP_WARNING -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.5/mmapcharr/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c nb-na.cpp -o nb-na.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -DARMA_DONT_PRINT_OPENMP_WARNING -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.5/mmapcharr/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c pedUtils.cpp -o pedUtils.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -DARMA_DONT_PRINT_OPENMP_WARNING -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.5/mmapcharr/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c prodMat.cpp -o prodMat.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -DARMA_DONT_PRINT_OPENMP_WARNING -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.5/mmapcharr/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c total-var.cpp -o total-var.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -DARMA_DONT_PRINT_OPENMP_WARNING -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.5/mmapcharr/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c vcfUtils.cpp -o vcfUtils.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include -DARMA_DONT_PRINT_OPENMP_WARNING -DSTRICT_R_HEADERS -I'D:/RCompile/CRANpkg/lib/4.5/mmapcharr/include' -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c writebed.cpp -o writebed.o
g++ -std=gnu++17 -shared -s -static-libgcc -o pcadapt.dll tmp.def RcppExports.o af.o bed-acc-xptr.o bed2matrix.o clumping.o linear-regression.o nb-na.o pedUtils.o prodMat.o total-var.o vcfUtils.o writebed.o -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-pcadapt/00new/pcadapt/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pcadapt)