* installing *source* package ‘pcaL1’ ... ** using staged installation checking for gcc... clang-16 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang-16 accepts -g... yes checking for clang-16 option to accept ISO C89... none needed checking how to run the C preprocessor... clang-16 -E checking for pkg-config... /usr/bin/pkg-config configure: set compile and link flags according to pkg-config configure: compile flags are -I/usr/include/coin configure: link flags are -lClpSolver -lClp -lCoinUtils -lbz2 -lz -llapack -lblas -lm checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking for Clp_C_Interface.h... yes checking for library containing Clp_newModel... none required checking for library containing Clp_setRowName... none required configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘Debian clang version 16.0.6 (13)’ clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o In file included from init.c:1: In file included from ./type.h:11: /usr/include/coin/Clp_C_Interface.h:77:47: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new(); ^ void 1 warning generated. clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c l1pca.c -o l1pca.o In file included from l1pca.c:1: In file included from ./type.h:11: /usr/include/coin/Clp_C_Interface.h:77:47: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new(); ^ void 1 warning generated. clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c l1pca_R.c -o l1pca_R.o In file included from l1pca_R.c:1: In file included from ./type.h:11: /usr/include/coin/Clp_C_Interface.h:77:47: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new(); ^ void 1 warning generated. clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c l1pcahp.c -o l1pcahp.o In file included from l1pcahp.c:1: In file included from ./type.h:11: /usr/include/coin/Clp_C_Interface.h:77:47: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new(); ^ void 1 warning generated. clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c l1pcahp_R.c -o l1pcahp_R.o In file included from l1pcahp_R.c:1: In file included from ./type.h:11: /usr/include/coin/Clp_C_Interface.h:77:47: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new(); ^ void 1 warning generated. clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c l1pcastar.c -o l1pcastar.o In file included from l1pcastar.c:1: In file included from ./type.h:11: /usr/include/coin/Clp_C_Interface.h:77:47: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new(); ^ void l1pcastar.c:20:7: warning: variable 'numprojdim' set but not used [-Wunused-but-set-variable] int numprojdim = probleminfo->numprojdim; ^ 2 warnings generated. clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c l1pcastar_R.c -o l1pcastar_R.o In file included from l1pcastar_R.c:1: In file included from ./type.h:11: /usr/include/coin/Clp_C_Interface.h:77:47: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new(); ^ void 1 warning generated. clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c l1projection.c -o l1projection.o In file included from l1projection.c:1: In file included from ./type.h:11: /usr/include/coin/Clp_C_Interface.h:77:47: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new(); ^ void 1 warning generated. clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c l1projection_R.c -o l1projection_R.o In file included from l1projection_R.c:1: In file included from ./type.h:11: /usr/include/coin/Clp_C_Interface.h:77:47: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new(); ^ void 1 warning generated. clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pcal1.c -o pcal1.o In file included from pcal1.c:1: In file included from ./type.h:11: /usr/include/coin/Clp_C_Interface.h:77:47: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new(); ^ void 1 warning generated. clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pcal1_R.c -o pcal1_R.o In file included from pcal1_R.c:1: In file included from ./type.h:11: /usr/include/coin/Clp_C_Interface.h:77:47: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new(); ^ void 1 warning generated. clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pcalp.c -o pcalp.o In file included from pcalp.c:1: In file included from ./type.h:11: /usr/include/coin/Clp_C_Interface.h:77:47: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new(); ^ void 1 warning generated. clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pcalp_R.c -o pcalp_R.o In file included from pcalp_R.c:1: In file included from ./type.h:11: /usr/include/coin/Clp_C_Interface.h:77:47: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new(); ^ void 1 warning generated. clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sharpel1pca.c -o sharpel1pca.o In file included from sharpel1pca.c:1: In file included from ./type.h:11: /usr/include/coin/Clp_C_Interface.h:77:47: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new(); ^ void 1 warning generated. clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sharpel1pca_R.c -o sharpel1pca_R.o In file included from sharpel1pca_R.c:1: In file included from ./type.h:11: /usr/include/coin/Clp_C_Interface.h:77:47: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new(); ^ void 1 warning generated. clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sharpel1rs.c -o sharpel1rs.o In file included from sharpel1rs.c:1: In file included from ./type.h:11: /usr/include/coin/Clp_C_Interface.h:77:47: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new(); ^ void 1 warning generated. clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sharpel1rs_R.c -o sharpel1rs_R.o In file included from sharpel1rs_R.c:1: In file included from ./type.h:11: /usr/include/coin/Clp_C_Interface.h:77:47: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new(); ^ void 1 warning generated. clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sparsel1pca.c -o sparsel1pca.o In file included from sparsel1pca.c:4: In file included from ./type.h:11: /usr/include/coin/Clp_C_Interface.h:77:47: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new(); ^ void 1 warning generated. clang-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/coin -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sparsel1pca_R.c -o sparsel1pca_R.o In file included from sparsel1pca_R.c:1: In file included from ./type.h:11: /usr/include/coin/Clp_C_Interface.h:77:47: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes] COINLIBAPI Clp_Solve *COINLINKAGE ClpSolve_new(); ^ void 1 warning generated. clang-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o pcaL1.so init.o l1pca.o l1pca_R.o l1pcahp.o l1pcahp_R.o l1pcastar.o l1pcastar_R.o l1projection.o l1projection_R.o pcal1.o pcal1_R.o pcalp.o pcalp_R.o sharpel1pca.o sharpel1pca_R.o sharpel1rs.o sharpel1rs_R.o sparsel1pca.o sparsel1pca_R.o -lClpSolver -lClp -lCoinUtils -lbz2 -lz -llapack -lblas -lm -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR installing to /srv/hornik/tmp/CRAN/pcaL1.Rcheck/00LOCK-pcaL1/00new/pcaL1/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pcaL1)