downloading reverse dependencies ‘kazaam’, ‘mlr3resampling’, ‘pbdSLAP’, ‘pmclust’, ‘Chaos01’ trying URL 'file:///data/Repositories/CRAN/src/contrib/kazaam_0.1-0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mlr3resampling_2026.2.24.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/pbdSLAP_0.3-7.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/pmclust_0.2-1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/Chaos01_1.2.1.tar.gz' installing dependencies ‘animint2’, ‘mlr3torch’, ‘nc’, ‘pbdMPI’ begin installing package ‘pbdMPI’ begin installing package ‘animint2’ begin installing package ‘nc’ begin installing package ‘mlr3torch’ * installing *source* package ‘nc’ ... ** this is package ‘nc’ version ‘2026.2.20’ ** package ‘nc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nc) * installing *source* package ‘pbdMPI’ ... ** this is package ‘pbdMPI’ version ‘0.5-5’ ** using staged installation checking for sed... /usr/bin/sed checking for mpicc... mpicc checking for ompi_info... ompi_info checking for pkg-config... /usr/bin/pkg-config Try sed, mpicc, and ompi_info ... >> TMP_INC_DIRS = /usr/lib/x86_64-linux-gnu/openmpi/include /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi Checking /usr/lib/x86_64-linux-gnu/openmpi/include ... Found /usr/lib/x86_64-linux-gnu/openmpi/include/mpi.h ... >> TMP_LIB_DIRS = /usr/lib/x86_64-linux-gnu/openmpi/lib Checking /usr/lib/x86_64-linux-gnu/openmpi/lib ... Found /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so ... Found mpi.h and libmpi.so ... via mpicc --showme >> TMP_INC = /usr/lib/x86_64-linux-gnu/openmpi/include >> TMP_LIB = /usr/lib/x86_64-linux-gnu/openmpi/lib >> TMP_FOUND = mpicc --showme checking for openpty in -lutil... yes checking for main in -lpthread... yes ./configure: line 4738: module: command not found ******************* Results of pbdMPI package configure ***************** >> MPIRUN = /usr/bin/mpirun >> MPIEXEC = /usr/bin/mpiexec >> ORTERUN = >> TMP_INC = /usr/lib/x86_64-linux-gnu/openmpi/include >> TMP_LIB = /usr/lib/x86_64-linux-gnu/openmpi/lib >> TMP_LIBNAME = libmpi.so >> TMP_FOUND = mpicc --showme >> MPI_ROOT = >> MPITYPE = OPENMPI >> MPI_INCLUDE_PATH = /usr/lib/x86_64-linux-gnu/openmpi/include >> MPI_LIBPATH = /usr/lib/x86_64-linux-gnu/openmpi/lib >> MPI_LIBNAME = libmpi.so >> MPI_LIBS = -lutil -lpthread >> MPI_DEFS = -DMPI2 >> MPI_INCL2 = >> MPI_LDFLAGS = >> PKG_CPPFLAGS = -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI >> PKG_LIBS = -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi -lutil -lpthread >> PROF_LDFLAGS = >> ENABLE_LD_LIBRARY_PATH = no ************************************************************************* configure: creating ./config.status config.status: creating src/Makevars configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/zzz.r config.status: creating R/util_execmpi.r ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpoy2Odf/R.INSTALLef0497b38b2ab/pbdMPI/src' echo "MPIRUN = /usr/bin/mpirun" > Makeconf echo "MPIEXEC = /usr/bin/mpiexec" >> Makeconf echo "ORTERUN = " >> Makeconf echo "TMP_INC = /usr/lib/x86_64-linux-gnu/openmpi/include" >> Makeconf echo "TMP_LIB = /usr/lib/x86_64-linux-gnu/openmpi/lib" >> Makeconf echo "TMP_LIBNAME = libmpi.so" >> Makeconf echo "TMP_FOUND = mpicc --showme" >> Makeconf echo "MPI_ROOT = " >> Makeconf echo "MPITYPE = OPENMPI" >> Makeconf echo "MPI_INCLUDE_PATH = /usr/lib/x86_64-linux-gnu/openmpi/include" >> Makeconf echo "MPI_LIBPATH = /usr/lib/x86_64-linux-gnu/openmpi/lib" >> Makeconf echo "MPI_LIBNAME = libmpi.so" >> Makeconf echo "MPI_LIBS = -lutil -lpthread" >> Makeconf echo "MPI_DEFS = -DMPI2" >> Makeconf echo "MPI_INCL2 = " >> Makeconf echo "MPI_LDFLAGS = " >> Makeconf echo "PKG_CPPFLAGS = -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI" >> Makeconf echo "PKG_LIBS = -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi -lutil -lpthread" >> Makeconf echo "PROF_LDFLAGS = " >> Makeconf echo "ENABLE_LD_LIBRARY_PATH = no" >> Makeconf gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c comm_errors.c -o comm_errors.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c comm_sort_double.c -o comm_sort_double.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c comm_sort_integer.c -o comm_sort_integer.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pkg_dl.c -o pkg_dl.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pkg_tools.c -o pkg_tools.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd.c -o spmd.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_allgather.c -o spmd_allgather.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_allgatherv.c -o spmd_allgatherv.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_allreduce.c -o spmd_allreduce.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_alltoall.c -o spmd_alltoall.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_alltoallv.c -o spmd_alltoallv.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_bcast.c -o spmd_bcast.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_communicator.c -o spmd_communicator.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_communicator_spawn.c -o spmd_communicator_spawn.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_gather.c -o spmd_gather.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_gatherv.c -o spmd_gatherv.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_info.c -o spmd_info.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_recv.c -o spmd_recv.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_reduce.c -o spmd_reduce.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_scatter.c -o spmd_scatter.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_scatterv.c -o spmd_scatterv.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_send.c -o spmd_send.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_sendrecv.c -o spmd_sendrecv.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_sendrecv_replace.c -o spmd_sendrecv_replace.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_tool.c -o spmd_tool.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_utility.c -o spmd_utility.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spmd_wait.c -o spmd_wait.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/lib/x86_64-linux-gnu/openmpi/include -DMPI2 -DOPENMPI -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c zzz.c -o zzz.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o pbdMPI.so comm_errors.o comm_sort_double.o comm_sort_integer.o pkg_dl.o pkg_tools.o spmd.o spmd_allgather.o spmd_allgatherv.o spmd_allreduce.o spmd_alltoall.o spmd_alltoallv.o spmd_bcast.o spmd_communicator.o spmd_communicator_spawn.o spmd_gather.o spmd_gatherv.o spmd_info.o spmd_recv.o spmd_reduce.o spmd_scatter.o spmd_scatterv.o spmd_send.o spmd_sendrecv.o spmd_sendrecv_replace.o spmd_tool.o spmd_utility.o spmd_wait.o zzz.o -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi -lutil -lpthread -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpoy2Odf/R.INSTALLef0497b38b2ab/pbdMPI/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-pbdMPI/00new/pbdMPI ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pbdMPI) * installing *source* package ‘animint2’ ... ** this is package ‘animint2’ version ‘2025.10.17’ ** package ‘animint2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (animint2) * installing *source* package ‘mlr3torch’ ... ** this is package ‘mlr3torch’ version ‘0.3.3’ ** package ‘mlr3torch’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlr3torch) checking pbdMPI_0.5-5.tar.gz ... checking kazaam_0.1-0.tar.gz ... checking mlr3resampling_2026.2.24.tar.gz ... checking pbdSLAP_0.3-7.tar.gz ... checking pmclust_0.2-1.tar.gz ... checking Chaos01_1.2.1.tar.gz ... Depends: Package: pbdMPI Depends: R (>= 3.6.0), methods Imports: float, parallel Timings: user system elapsed pbdMPI 59.924 10.015 89.314 Results: Check status summary: OK Source packages 1 Reverse depends 5 Check results summary: pbdMPI ... OK rdepends_Chaos01 ... OK rdepends_kazaam ... OK rdepends_mlr3resampling ... OK rdepends_pbdSLAP ... OK rdepends_pmclust ... OK Check results changes: Package: kazaam Check: CRAN incoming feasibility Old result: NOTE Package: pmclust Check: CRAN incoming feasibility Old result: NOTE