* using log directory ‘/srv/hornik/tmp/CRAN/pbdMPI.Rcheck’ * using R Under development (unstable) (2023-09-03 r85052) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 16.0.6 (11) GNU Fortran (Debian 13.2.0-2) 13.2.0 * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘pbdMPI/DESCRIPTION’ ... OK * this is package ‘pbdMPI’ version ‘0.5-0’ * checking CRAN incoming feasibility ... [5s/8s] NOTE Maintainer: ‘Wei-Chen Chen ’ Possibly misspelled words in DESCRIPTION: HPC (3:31, 22:60, 24:49) Rmpi (23:44) pbdMPI (23:58) reproducibility (26:55) * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘pbdMPI’ can be installed ... [10s/11s] OK * used C compiler: ‘Debian clang version 16.0.6 (11)’ * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking whether startup messages can be suppressed ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [9s/10s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [3s/17s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... [4s/4s] OK * checking PDF version of manual ... [4s/4s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... NOTE Found the following files/directories: ‘pmix-gds-shmem.anduin3-3759538177.jobdata.3380064’ ‘pmix-gds-shmem.anduin3-3759538177.session.ffffffff.3380064’ ‘pmix-gds-shmem.anduin3-3764846593.jobdata.3379985’ ‘pmix-gds-shmem.anduin3-3764846593.session.ffffffff.3379985’ ‘pmix-gds-shmem.anduin3-3767009281.jobdata.3380222’ ‘pmix-gds-shmem.anduin3-3767009281.session.ffffffff.3380222’ ‘pmix-gds-shmem.anduin3-3771072513.jobdata.3380144’ ‘pmix-gds-shmem.anduin3-3771072513.session.ffffffff.3380144’ ‘pmix-gds-shmem.anduin3-3775004673.jobdata.3379828’ ‘pmix-gds-shmem.anduin3-3775004673.session.ffffffff.3379828’ ‘pmix-gds-shmem.anduin3-3786670081.jobdata.3379906’ ‘pmix-gds-shmem.anduin3-3786670081.session.ffffffff.3379906’ ‘pmix-gds-shmem.anduin3-3796500481.jobdata.3379516’ ‘pmix-gds-shmem.anduin3-3796500481.session.ffffffff.3379516’ ‘pmix-gds-shmem.anduin3-3803054081.jobdata.3379672’ ‘pmix-gds-shmem.anduin3-3803054081.session.ffffffff.3379672’ ‘pmix-gds-shmem.anduin3-3808165889.jobdata.3379594’ ‘pmix-gds-shmem.anduin3-3808165889.session.ffffffff.3379594’ ‘pmix-gds-shmem.anduin3-3818389505.jobdata.3379438’ ‘pmix-gds-shmem.anduin3-3818389505.session.ffffffff.3379438’ ‘pmix-gds-shmem.anduin3-3827302401.jobdata.3381078’ ‘pmix-gds-shmem.anduin3-3827302401.session.ffffffff.3381078’ ‘pmix-gds-shmem.anduin3-3833462785.jobdata.3381000’ ‘pmix-gds-shmem.anduin3-3833462785.session.ffffffff.3381000’ ‘pmix-gds-shmem.anduin3-3839492097.jobdata.3381164’ ‘pmix-gds-shmem.anduin3-3839492097.session.ffffffff.3381164’ ‘pmix-gds-shmem.anduin3-3843686401.jobdata.3380844’ ‘pmix-gds-shmem.anduin3-3843686401.session.ffffffff.3380844’ ‘pmix-gds-shmem.anduin3-3849584641.jobdata.3380738’ ‘pmix-gds-shmem.anduin3-3849584641.session.ffffffff.3380738’ ‘pmix-gds-shmem.anduin3-3855351809.jobdata.3380922’ ‘pmix-gds-shmem.anduin3-3855351809.session.ffffffff.3380922’ ‘pmix-gds-shmem.anduin3-3862429697.jobdata.3380558’ ‘pmix-gds-shmem.anduin3-3862429697.session.ffffffff.3380558’ ‘pmix-gds-shmem.anduin3-3866492929.jobdata.3380480’ ‘pmix-gds-shmem.anduin3-3866492929.session.ffffffff.3380480’ ‘pmix-gds-shmem.anduin3-3871473665.jobdata.3380660’ ‘pmix-gds-shmem.anduin3-3871473665.session.ffffffff.3380660’ ‘pmix-gds-shmem.anduin3-3879337985.jobdata.3380300’ ‘pmix-gds-shmem.anduin3-3879337985.session.ffffffff.3380300’ ‘pmix-gds-shmem.anduin3-3891003393.jobdata.3380378’ ‘pmix-gds-shmem.anduin3-3891003393.session.ffffffff.3380378’ ‘pmix-gds-shmem.anduin3-4228251649.jobdata.3379056’ ‘pmix-gds-shmem.anduin3-4228251649.session.ffffffff.3379056’ ‘pmix-gds-shmem.anduin3-4239917057.jobdata.3379150’ ‘pmix-gds-shmem.anduin3-4239917057.session.ffffffff.3379150’ * DONE Status: 2 NOTEs