## Import motive data motive_data <- # import read_motive_csv( system.file("extdata", "pathviewr_motive_example_data.csv", package = 'pathviewr') ) ## Clean motive data motive_full <- motive_data %>% clean_viewr( relabel_viewr_axes = TRUE, gather_tunnel_data = TRUE, trim_tunnel_outliers = TRUE, standardization_option = "rotate_tunnel", select_x_percent = TRUE, desired_percent = 50, rename_viewr_characters = FALSE, separate_trajectories = TRUE, max_frame_gap = "autodetect", get_full_trajectories = TRUE, span = 0.95 ) ## Prep motive data motive_treat <- motive_full %>% insert_treatments(tunnel_config = "v", perch_2_vertex = 0.3855, vertex_angle = 90, tunnel_length = 2, stim_param_lat_pos = 0.05, stim_param_lat_neg = 0.05, stim_param_end_pos = 0.1, stim_param_end_neg = 0.1, treatment = "latB") ## Import flydra data flydra_data <- read_flydra_mat( system.file("extdata", "pathviewr_flydra_example_data.mat", package = 'pathviewr'), subject_name = "birdie_wooster") ## Clean flydra data flydra_full <- flydra_data %>% clean_viewr( relabel_viewr_axes = FALSE, gather_tunnel_data = FALSE, trim_tunnel_outliers = FALSE, standardization_option = "redefine_tunnel_center", length_method = "middle", height_method = "user-defined", height_zero = 1.44, get_velocity = FALSE, select_x_percent = TRUE, desired_percent = 60, rename_viewr_characters = FALSE, separate_trajectories = TRUE, get_full_trajectories = TRUE ) ## Prep flydra data flydra_treat <- flydra_full %>% insert_treatments(tunnel_config = "box", tunnel_width = 1, tunnel_length = 3, stim_param_lat_pos = 0.05, stim_param_lat_neg = 0.05, stim_param_end_pos = 0.1, stim_param_end_neg = 0.1, treatment = "latB") test_that("insert_treatments() fails when nonsense is supplied", { expect_error(insert_treatments("steve")) expect_error(insert_treatments(c("a", "b", "c"))) expect_error(insert_treatments()) expect_error(insert_treatments(flydra_treat, tunnel_config = "box", tunnel_width = -1, # negative tunnel width tunnel_length = 3, stim_param_lat_pos = 0.05, stim_param_lat_neg = 0.05, stim_param_end_pos = 0.1, stim_param_end_neg = 0.1, treatment = "latB")) expect_error(insert_treatments(flydra_treat, tunnel_config = "box", tunnel_width = 1, tunnel_length = -3, # negative tunnel length stim_param_lat_pos = 0.05, stim_param_lat_neg = 0.05, stim_param_end_pos = 0.1, stim_param_end_neg = 0.1, treatment = "latB")) expect_error(insert_treatments(flydra_treat, tunnel_config = "box", tunnel_width = 1, tunnel_length = 3, stim_param_lat_pos = -0.05, # negative stim_param stim_param_lat_neg = 0.05, stim_param_end_pos = 0.1, stim_param_end_neg = 0.1, treatment = "latB")) }) ## Test output objects test_that("insert_treatments() adds variables appropriately", { ## Inserted variables at beginning of df expect_equal(names(motive_treat)[1:9], c("tunnel_config", "perch_2_vertex", "vertex_angle", "tunnel_length", "stim_param_lat_pos", "stim_param_lat_neg", "stim_param_end_pos", "stim_param_end_neg", "treatment") ) expect_equal(names(flydra_treat)[1:8], c("tunnel_config", "tunnel_width", "tunnel_length", "stim_param_lat_pos", "stim_param_lat_neg", "stim_param_end_pos", "stim_param_end_neg", "treatment") ) ## output objects are of correct dimensions expect_equal(dim(motive_treat), c(449, 33)) expect_equal(dim(flydra_treat), c(381, 27)) })