* using log directory ‘/srv/hornik/tmp/CRAN/pastclim.Rcheck’
* using R Under development (unstable) (2024-06-18 r86781)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.5 (2)
    Debian flang-new version 18.1.5 (2)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘pastclim/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pastclim’ version ‘2.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/7s] Note_to_CRAN_maintainers
Maintainer: ‘Andrea Manica <am315@cam.ac.uk>’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pastclim’ can be installed ... [10s/10s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [3s/3s] OK
* checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
* checking whether the package can be unloaded cleanly ... [3s/3s] OK
* checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK
* checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
* checking loading without being on the library search path ... [3s/3s] OK
* checking whether startup messages can be suppressed ... [3s/3s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [14s/14s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  location_slice_from_region_series.Rd: SpatRasterDataset
  slice_region_series.Rd: SpatRaster
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [4s/4s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [47s/47s] ERROR
  Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [47s/47s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(pastclim)
  Loading required package: terra
  terra 1.7.78
  WARNING: different compile-time and run-time versions of GEOS
  Compiled with:3.12.1-CAPI-1.18.1
   Running with:3.12.2-CAPI-1.18.2
  
  You should reinstall package 'terra'
  
  
  Attaching package: 'terra'
  
  The following objects are masked from 'package:testthat':
  
      compare, describe
  
  > 
  > test_check("pastclim")
  
  |---------|---------|---------|---------|
  =========================================
                                            
  
  |---------|---------|---------|---------|
  =========================================
                                            
  
  |---------|---------|---------|---------|
  =========================================
                                            
  
  |---------|---------|---------|---------|
  =========================================
                                            
  
  |---------|---------|---------|---------|
  =========================================
                                            
  
  |---------|---------|---------|---------|
  =========================================
                                            
  [ FAIL 2 | WARN 2 | SKIP 8 | PASS 1232 ]
  
  ══ Skipped tests (8) ═══════════════════════════════════════════════════════════
  • On CRAN (7): 'test_filenames_chelsa_future.R:4:3',
    'test_filenames_chelsa_present.R:4:3',
    'test_filenames_chelsa_trace21k.R:4:3', 'test_filenames_hyde.R:5:3',
    'test_filenames_paleoclim.R:4:3', 'test_filenames_worldclim_future.R:4:3',
    'test_filenames_worldclim_present.R:4:3'
  • Sys.getenv("PASTCLIM_TEST") != "download_full" is TRUE (1):
    'test_remote_files.R:22:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test_pastclim_rast.R:12:3'): pastclim_rast handles vrt correctly ────
  <Rcpp::exception/C++Error/error/condition>
  Error: buildvrt: options error
  Backtrace:
      ▆
   1. └─sf::gdal_utils(...) at test_pastclim_rast.R:12:3
   2.   └─sf:::CPL_gdalbuildvrt(...)
  ── Error ('test_vrt_set_get_meta.R:11:3'): setting and getting vrt meta ────────
  <Rcpp::exception/C++Error/error/condition>
  Error: buildvrt: options error
  Backtrace:
      ▆
   1. └─sf::gdal_utils(...) at test_vrt_set_get_meta.R:11:3
   2.   └─sf:::CPL_gdalbuildvrt(...)
  
  [ FAIL 2 | WARN 2 | SKIP 8 | PASS 1232 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [38s/38s] OK
* checking PDF version of manual ... [4s/4s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE