* using log directory ‘/srv/hornik/tmp/CRAN/pastaPlot.Rcheck’
* using R Under development (unstable) (2024-05-13 r86547)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.4 (1)
    Debian flang-new version 18.1.4 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘pastaPlot/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pastaPlot’ version ‘0.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [2s/2s] NOTE
Maintainer: ‘The package maintainer <jan.palnau@mailbox.org>’

New submission

Possibly misspelled words in DESCRIPTION:
  Lme (4:23)
  glmmTMB (4:32)

DESCRIPTION fields with placeholder content:
  Maintainer: The package maintainer <jan.palnau@mailbox.org>
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .Rd2pdf10300
  .Rd2pdf9804
  man/.Rd2pdf7724
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.

CRAN-pack does not know about
  .Rd2pdf10300
  .Rd2pdf9804
  man/.Rd2pdf7724
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘pastaPlot’ can be installed ... [1s/1s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Found the following directories with names of Rd2pdf directories:
  ./.Rd2pdf10300
  ./.Rd2pdf9804
  ./man/.Rd2pdf7724
Most likely, these were included erroneously.
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [2s/2s] NOTE
pastaPlot: no visible binding for global variable ‘pred’
pastaPlot: no visible binding for global variable ‘id’
pastaPlot: no visible binding for global variable ‘conf.low’
pastaPlot: no visible binding for global variable ‘conf.high’
pastaPlot: no visible binding for global variable ‘range_1’
Undefined global functions or variables:
  conf.high conf.low id pred range_1
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'pastaPlot.Rd':
  \examples lines wider than 100 characters:
     pastaPlot(lme4_model, "time", "id", group = "condition", legend.title = "Condition", group.labels = c("Control", "Intervention"), ci.in ... [TRUNCATED]
     glmmTMB_model <- glmmTMB::glmmTMB(math_score_y3 ~ 1 + math_score_y1*gender + (1 + math_score_y1 | school), data=jsp_data, REML = FALSE)
     pastaPlot(glmmTMB_model, "math_score_y1", "school", group = "gender", legend.title = "Gender", group.labels = c("Male", "Female"), ci.i ... [TRUNCATED]

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [3s/3s] OK
* checking PDF version of manual ... [3s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 WARNING, 4 NOTEs