suppressWarnings(RNGversion("3.5.2")) library("partykit") set.seed(29) n <- 100 x <- 1:n/n y <- rnorm(n, mean = (x < .5) + 1) xna <- x xna[xna < .2] <- NA d <- data.frame(x = x, y = y) dna <- data.frame(x = xna, y = y) (t1 <- ctree(y ~ x, data = d)) (t2 <- ctree(y ~ x, data = dna)) (t3 <- ctree(y ~ x, data = dna, control = ctree_control(MIA = TRUE))) predict(t1, type = "node")[is.na(xna)] predict(t2, type = "node")[is.na(xna)] predict(t3, type = "node")[is.na(xna)] xna <- x xna[xna > .8] <- NA d <- data.frame(x = x, y = y) dna <- data.frame(x = xna, y = y) (t1 <- ctree(y ~ x, data = d)) (t2 <- ctree(y ~ x, data = dna)) (t3 <- ctree(y ~ x, data = dna, control = ctree_control(MIA = TRUE))) (n1 <- predict(t1, type = "node")) (n2 <- predict(t2, type = "node")) (n3 <- predict(t3, type = "node")) table(n1, n2) table(n1, n3) d$x <- as.factor(cut(d$x, breaks = 0:5 / 5)) dna$x <- as.factor(cut(dna$x, breaks = 0:5 / 5)) (t1 <- ctree(y ~ x, data = d)) (t2 <- ctree(y ~ x, data = dna)) (t3 <- ctree(y ~ x, data = dna, control = ctree_control(MIA = TRUE))) (n1 <- predict(t1, type = "node")) (n2 <- predict(t2, type = "node")) (n3 <- predict(t3, type = "node")) table(n1, n2) table(n1, n3)