Package check result: NOTE Check: CRAN incoming feasibility, Result: NOTE Maintainer: ‘Max Kuhn ’ Found the following (possibly) invalid URLs: URL: https://www.csie.ntu.edu.tw/~cjlin/papers/plattprob.pdf From: man/details_svm_linear_kernlab.Rd man/details_svm_poly_kernlab.Rd man/details_svm_rbf_kernlab.Rd Status: Error Message: Could not resolve hostname [www.csie.ntu.edu.tw]: Could not resolve host: www.csie.ntu.edu.tw Changes to worse in reverse depends: Package: autostats Check: package dependencies New result: ERROR Package required but not available: ‘recosystem’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Package: SeroTrackR Check: re-building of vignette outputs New result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘FAQs.Rmd’ using rmarkdown --- finished re-building ‘FAQs.Rmd’ --- re-building ‘Pk_Pv_Pf_Serology_Tutorial.Rmd’ using rmarkdown Quitting from Pk_Pv_Pf_Serology_Tutorial.Rmd:63-72 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `readRDS()`: ! cannot read from connection --- Backtrace: ▆ 1. └─SeroTrackR::runPlasmoPipeline(...) 2. └─SeroTrackR::classifyResults(...) 3. └─base::readRDS(antibody_model) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Pk_Pv_Pf_Serology_Tutorial.Rmd' failed with diagnostics: cannot read from connection --- failed re-building ‘Pk_Pv_Pf_Serology_Tutorial.Rmd’ --- re-building ‘PvLDH_Tutorial.Rmd’ using rmarkdown --- finished re-building ‘PvLDH_Tutorial.Rmd’ --- re-building ‘PvSeroApp_R_Tutorial.Rmd’ using rmarkdown Quitting from PvSeroApp_R_Tutorial.Rmd:75-86 [runPvSeroPipeline with classification] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `readRDS()`: ! cannot read from connection --- Backtrace: ▆ 1. └─SeroTrackR::runPvSeroPipeline(...) 2. └─SeroTrackR::classifyResults(...) 3. └─base::readRDS(antibody_model) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'PvSeroApp_R_Tutorial.Rmd' failed with diagnostics: cannot read from connection --- failed re-building ‘PvSeroApp_R_Tutorial.Rmd’ --- re-building ‘setup.Rmd’ using rmarkdown [WARNING] Could not fetch resource ../man/figures/magpix_raw.jpeg [WARNING] Could not fetch resource ../man/figures/bioplex_raw.jpeg [WARNING] Could not fetch resource ../man/figures/plate_layout_1.jpeg --- finished re-building ‘setup.Rmd’ SUMMARY: processing the following files failed: ‘Pk_Pv_Pf_Serology_Tutorial.Rmd’ ‘PvSeroApp_R_Tutorial.Rmd’ Error: Vignette re-building failed. Execution halted Package: text Check: package dependencies New result: ERROR Package required but not available: ‘topics’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.