* using log directory ‘/srv/hornik/tmp/CRAN/parseRPDR.Rcheck’
* using R Under development (unstable) (2024-01-07 r85787)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (3)
    Debian flang-new version 17.0.6 (3)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘parseRPDR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘parseRPDR’ version ‘1.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/5s] Note_to_CRAN_maintainers
Maintainer: ‘Marton Kolossvary <mkolossvary@mgh.harvard.edu>’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘parseRPDR’ can be installed ... [3s/3s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking whether startup messages can be suppressed ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s/5s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [1s/1s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [7s/6s] ERROR
  Running ‘covr.R’ [0s/0s]
  Running ‘testthat.R’ [6s/6s]
Running the tests in ‘tests/covr.R’ failed.
Complete output:
  > library(covr)
  > coverage <- covr::package_coverage(path="/Users/mjk2/Dropbox (Personal)/R_packages/parseRPDR/")
  Error: `path` is invalid: /Users/mjk2/Dropbox (Personal)/R_packages/parseRPDR
  Execution halted
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(parseRPDR)
  
  
                                                          _/_/_/    _/_/_/    _/_/_/    _/_/_/
       _/_/_/      _/_/_/  _/  _/_/    _/_/_/    _/_/    _/    _/  _/    _/  _/    _/  _/    _/
      _/    _/  _/    _/  _/_/      _/_/      _/_/_/_/  _/_/_/    _/_/_/    _/    _/  _/_/_/
     _/    _/  _/    _/  _/            _/_/  _/        _/    _/  _/        _/    _/  _/    _/
    _/_/_/      _/_/_/  _/        _/_/_/      _/_/_/  _/    _/  _/        _/_/_/    _/    _/
   _/
  _/
  
                                  by: Márton Kolossváry, MD PhD
  
  
  Please cite:
  Kolossváry M et al.
  Deep Learning Analysis of Chest Radiographs to Triage Patients with Acute Chest Pain Syndrome.
  Radiology. 2023;306(2):e221926.
  DOI: 10.1148/radiol.221926
  
  > 
  > testthat::test_check("parseRPDR")
  Loading required package: foreach
  Loading required package: future
  Loading required package: foreach
  Loading required package: future
  Loading required package: foreach
  Loading required package: future
  Loading required package: foreach
  Loading required package: future
  Loading required package: foreach
  Loading required package: future
  Loading required package: foreach
  Loading required package: future
  [ FAIL 33 | WARN 3 | SKIP 0 | PASS 66 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-create_img_db.R:46:3'): (code run outside of `test_that()`) ────
  Error in `as.vector(d_s[, lapply(.SD, class)])[1, ]`: incorrect number of dimensions
  Backtrace:
      ▆
   1. ├─testthat::expect_true(...) at test-create_img_db.R:45:1
   2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─base::which(as.vector(d_s[, lapply(.SD, class)])[1, ] == "POSIXct") at test-create_img_db.R:46:3
  ── Error ('test-find_exam.R:20:1'): (code run outside of `test_that()`) ────────
  Error in `data.table::fread(file, showProgress = FALSE, colClasses = "character", 
      nThread = nThread, fill = fill, sep = sep_load)`: input= must be a single character string containing a file name, a system command containing at least one space, a URL starting 'http[s]://', 'ftp[s]://' or 'file://', or, the input data itself containing at least one \n or \r
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_enc(d_fname, nThread = 2)) at test-find_exam.R:20:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_enc(d_fname, nThread = 2)
   4.   └─parseRPDR:::load_base(...)
   5.     └─data.table::fread(...)
  ── Error ('test-load_all.R:20:1'): (code run outside of `test_that()`) ─────────
  Error in `data.table::fread(file, showProgress = FALSE, colClasses = "character", 
      nThread = nThread, fill = fill, sep = sep_load)`: input= must be a single character string containing a file name, a system command containing at least one space, a URL starting 'http[s]://', 'ftp[s]://' or 'file://', or, the input data itself containing at least one \n or \r
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_all(d_fname, nThread = 1)) at test-load_all.R:20:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_all(d_fname, nThread = 1)
   4.   └─parseRPDR:::load_base(...)
   5.     └─data.table::fread(...)
  ── Error ('test-load_bib.R:20:1'): (code run outside of `test_that()`) ─────────
  Error in `data.table::fread(file, showProgress = FALSE, colClasses = "character", 
      nThread = nThread, fill = fill, sep = sep_load)`: input= must be a single character string containing a file name, a system command containing at least one space, a URL starting 'http[s]://', 'ftp[s]://' or 'file://', or, the input data itself containing at least one \n or \r
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_bib(d_fname, nThread = 1)) at test-load_bib.R:20:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_bib(d_fname, nThread = 1)
   4.   └─parseRPDR:::load_base(...)
   5.     └─data.table::fread(...)
  ── Error ('test-load_con.R:20:1'): (code run outside of `test_that()`) ─────────
  Error in `data.table::fread(file, showProgress = FALSE, colClasses = "character", 
      nThread = nThread, fill = fill, sep = sep_load)`: input= must be a single character string containing a file name, a system command containing at least one space, a URL starting 'http[s]://', 'ftp[s]://' or 'file://', or, the input data itself containing at least one \n or \r
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_con(d_fname, nThread = 1)) at test-load_con.R:20:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_con(d_fname, nThread = 1)
   4.   └─parseRPDR:::load_base(...)
   5.     └─data.table::fread(...)
  ── Error ('test-load_dem.R:20:1'): (code run outside of `test_that()`) ─────────
  Error in `data.table::fread(file, showProgress = FALSE, colClasses = "character", 
      nThread = nThread, fill = fill, sep = sep_load)`: input= must be a single character string containing a file name, a system command containing at least one space, a URL starting 'http[s]://', 'ftp[s]://' or 'file://', or, the input data itself containing at least one \n or \r
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_dem(d_fname, nThread = 1)) at test-load_dem.R:20:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_dem(d_fname, nThread = 1)
   4.   └─parseRPDR:::load_base(...)
   5.     └─data.table::fread(...)
  ── Error ('test-load_dem_old.R:20:1'): (code run outside of `test_that()`) ─────
  Error in `data.table::fread(file, showProgress = FALSE, colClasses = "character", 
      nThread = nThread, fill = fill, sep = sep_load)`: input= must be a single character string containing a file name, a system command containing at least one space, a URL starting 'http[s]://', 'ftp[s]://' or 'file://', or, the input data itself containing at least one \n or \r
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_dem_old(d_fname, nThread = 1)) at test-load_dem_old.R:20:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_dem_old(d_fname, nThread = 1)
   4.   └─parseRPDR:::load_base(...)
   5.     └─data.table::fread(...)
  ── Error ('test-load_dia.R:20:1'): (code run outside of `test_that()`) ─────────
  Error in `data.table::fread(file, showProgress = FALSE, colClasses = "character", 
      nThread = nThread, fill = fill, sep = sep_load)`: input= must be a single character string containing a file name, a system command containing at least one space, a URL starting 'http[s]://', 'ftp[s]://' or 'file://', or, the input data itself containing at least one \n or \r
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_dia(d_fname, nThread = 1)) at test-load_dia.R:20:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_dia(d_fname, nThread = 1)
   4.   └─parseRPDR:::load_base(...)
   5.     └─data.table::fread(...)
  ── Error ('test-load_enc.R:20:1'): (code run outside of `test_that()`) ─────────
  Error in `data.table::fread(file, showProgress = FALSE, colClasses = "character", 
      nThread = nThread, fill = fill, sep = sep_load)`: input= must be a single character string containing a file name, a system command containing at least one space, a URL starting 'http[s]://', 'ftp[s]://' or 'file://', or, the input data itself containing at least one \n or \r
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_enc(d_fname, nThread = 1)) at test-load_enc.R:20:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_enc(d_fname, nThread = 1)
   4.   └─parseRPDR:::load_base(...)
   5.     └─data.table::fread(...)
  ── Error ('test-load_lab.R:20:1'): (code run outside of `test_that()`) ─────────
  Error in `data.table::fread(file, showProgress = FALSE, colClasses = "character", 
      nThread = nThread, fill = fill, sep = sep_load)`: input= must be a single character string containing a file name, a system command containing at least one space, a URL starting 'http[s]://', 'ftp[s]://' or 'file://', or, the input data itself containing at least one \n or \r
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_lab(d_fname, nThread = 1)) at test-load_lab.R:20:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_lab(d_fname, nThread = 1)
   4.   └─parseRPDR:::load_base(...)
   5.     └─data.table::fread(...)
  ── Error ('test-load_lno.R:20:1'): (code run outside of `test_that()`) ─────────
  <subscriptOutOfBoundsError/error/condition>
  Error in `which_rows[[x]]`: subscript out of bounds
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_lno(d_fname, nThread = 1)) at test-load_lno.R:20:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_lno(d_fname, nThread = 1)
   4.   └─base::lapply(...)
   5.     └─parseRPDR (local) FUN(X[[i]], ...)
   6.       ├─base::paste(...)
   7.       └─base::paste(record[1:max(which_rows[[x]])], collapse = " ")
  ── Error ('test-load_mcm.R:20:1'): (code run outside of `test_that()`) ─────────
  Error in `if (is.na(file_info$size)) stop("File '", file, "' does not exist or is non-readable. getwd()=='", 
      getwd(), "'")`: argument is of length zero
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_mcm(d_fname, nThread = 1)) at test-load_mcm.R:20:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_mcm(d_fname, nThread = 1)
   4.   └─data.table::fread(file = file, nThread = nThread, colClasses = "character")
  ── Error ('test-load_med.R:20:1'): (code run outside of `test_that()`) ─────────
  Error in `data.table::fread(file, showProgress = FALSE, colClasses = "character", 
      nThread = nThread, fill = fill, sep = sep_load)`: input= must be a single character string containing a file name, a system command containing at least one space, a URL starting 'http[s]://', 'ftp[s]://' or 'file://', or, the input data itself containing at least one \n or \r
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_med(d_fname, nThread = 1)) at test-load_med.R:20:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_med(d_fname, nThread = 1)
   4.   └─parseRPDR:::load_base(...)
   5.     └─data.table::fread(...)
  ── Error ('test-load_mic.R:23:3'): (code run outside of `test_that()`) ─────────
  Error in `if (length(res) == 0 || res == -1) {
      return(list(path = path, extension = ""))
  }`: missing value where TRUE/FALSE needed
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_mic(d_fname[i], nThread = 1)) at test-load_mic.R:23:3
   2. │ └─base::withCallingHandlers(...)
   3. ├─parseRPDR::load_mic(d_fname[i], nThread = 1)
   4. │ └─readr::read_lines(...)
   5. │   └─vroom::vroom_lines(...)
   6. │     └─vroom:::vroom_(...)
   7. └─vroom (local) `<fn>`(NA_character_)
   8.   └─vroom:::split_path_ext(basename_utf8(path))
  ── Error ('test-load_mrn.R:20:1'): (code run outside of `test_that()`) ─────────
  Error in `data.table::fread(file, showProgress = FALSE, colClasses = "character", 
      nThread = nThread, fill = fill, sep = sep_load)`: input= must be a single character string containing a file name, a system command containing at least one space, a URL starting 'http[s]://', 'ftp[s]://' or 'file://', or, the input data itself containing at least one \n or \r
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_mrn(d_fname, nThread = 1)) at test-load_mrn.R:20:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_mrn(d_fname, nThread = 1)
   4.   └─parseRPDR:::load_base(...)
   5.     └─data.table::fread(...)
  ── Error ('test-load_notes.R:27:3'): (code run outside of `test_that()`) ───────
  Error in `if (length(res) == 0 || res == -1) {
      return(list(path = path, extension = ""))
  }`: missing value where TRUE/FALSE needed
  Backtrace:
      ▆
   1. ├─base::suppressMessages(...) at test-load_notes.R:27:3
   2. │ └─base::withCallingHandlers(...)
   3. ├─parseRPDR::load_notes(...)
   4. │ └─readr::read_lines(...)
   5. │   └─vroom::vroom_lines(...)
   6. │     └─vroom:::vroom_(...)
   7. └─vroom (local) `<fn>`(NA_character_)
   8.   └─vroom:::split_path_ext(basename_utf8(path))
  ── Error ('test-load_phy.R:20:1'): (code run outside of `test_that()`) ─────────
  Error in `data.table::fread(file, showProgress = FALSE, colClasses = "character", 
      nThread = nThread, fill = fill, sep = sep_load)`: input= must be a single character string containing a file name, a system command containing at least one space, a URL starting 'http[s]://', 'ftp[s]://' or 'file://', or, the input data itself containing at least one \n or \r
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_phy(d_fname, nThread = 1)) at test-load_phy.R:20:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_phy(d_fname, nThread = 1)
   4.   └─parseRPDR:::load_base(...)
   5.     └─data.table::fread(...)
  ── Error ('test-load_prc.R:21:3'): (code run outside of `test_that()`) ─────────
  Error in `split.default(v, sort(rep_len(1:nThread, length(v))))`: first argument must be a vector
  Backtrace:
       ▆
    1. ├─testthat::expect_true(...) at test-load_prc.R:19:1
    2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
    3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
    4. ├─base::suppressMessages(load_prc(d_fname, nThread = 1)) at test-load_prc.R:21:3
    5. │ └─base::withCallingHandlers(...)
    6. └─parseRPDR::load_prc(d_fname, nThread = 1)
    7.   └─base::lapply(...)
    8.     └─parseRPDR (local) FUN(X[[i]], ...)
    9.       ├─base::suppressMessages(...)
   10.       │ └─base::withCallingHandlers(...)
   11.       └─parseRPDR:::load_base(...)
   12.         └─parseRPDR::pretty_mrn(...)
   13.           ├─base::split(v, sort(rep_len(1:nThread, length(v))))
   14.           └─base::split.default(v, sort(rep_len(1:nThread, length(v))))
  ── Error ('test-load_prv.R:20:1'): (code run outside of `test_that()`) ─────────
  Error in `data.table::fread(file, showProgress = FALSE, colClasses = "character", 
      nThread = nThread, fill = fill, sep = sep_load)`: input= must be a single character string containing a file name, a system command containing at least one space, a URL starting 'http[s]://', 'ftp[s]://' or 'file://', or, the input data itself containing at least one \n or \r
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_prv(d_fname, nThread = 1)) at test-load_prv.R:20:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_prv(d_fname, nThread = 1)
   4.   └─parseRPDR:::load_base(...)
   5.     └─data.table::fread(...)
  ── Error ('test-load_ptd.R:20:1'): (code run outside of `test_that()`) ─────────
  Error in `data.table::fread(file, showProgress = FALSE, colClasses = "character", 
      nThread = nThread, fill = fill, sep = sep_load)`: input= must be a single character string containing a file name, a system command containing at least one space, a URL starting 'http[s]://', 'ftp[s]://' or 'file://', or, the input data itself containing at least one \n or \r
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_ptd(d_fname, nThread = 1)) at test-load_ptd.R:20:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_ptd(d_fname, nThread = 1)
   4.   └─parseRPDR:::load_base(...)
   5.     └─data.table::fread(...)
  ── Error ('test-load_rdt.R:20:1'): (code run outside of `test_that()`) ─────────
  Error in `data.table::fread(file, showProgress = FALSE, colClasses = "character", 
      nThread = nThread, fill = fill, sep = sep_load)`: input= must be a single character string containing a file name, a system command containing at least one space, a URL starting 'http[s]://', 'ftp[s]://' or 'file://', or, the input data itself containing at least one \n or \r
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_rdt(d_fname, nThread = 1)) at test-load_rdt.R:20:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_rdt(d_fname, nThread = 1)
   4.   └─parseRPDR:::load_base(...)
   5.     └─data.table::fread(...)
  ── Error ('test-load_rfv.R:20:1'): (code run outside of `test_that()`) ─────────
  Error in `data.table::fread(file, showProgress = FALSE, colClasses = "character", 
      nThread = nThread, fill = fill, sep = sep_load)`: input= must be a single character string containing a file name, a system command containing at least one space, a URL starting 'http[s]://', 'ftp[s]://' or 'file://', or, the input data itself containing at least one \n or \r
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_rfv(d_fname, nThread = 1)) at test-load_rfv.R:20:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_rfv(d_fname, nThread = 1)
   4.   └─parseRPDR:::load_base(...)
   5.     └─data.table::fread(...)
  ── Error ('test-load_trn.R:20:1'): (code run outside of `test_that()`) ─────────
  Error in `data.table::fread(file, showProgress = FALSE, colClasses = "character", 
      nThread = nThread, fill = fill, sep = sep_load)`: input= must be a single character string containing a file name, a system command containing at least one space, a URL starting 'http[s]://', 'ftp[s]://' or 'file://', or, the input data itself containing at least one \n or \r
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_trn(d_fname, nThread = 1)) at test-load_trn.R:20:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_trn(d_fname, nThread = 1)
   4.   └─parseRPDR:::load_base(...)
   5.     └─data.table::fread(...)
  ── Error ('test-convert_dia.R:21:1'): (code run outside of `test_that()`) ──────
  Error in `data.table::fread(file, showProgress = FALSE, colClasses = "character", 
      nThread = nThread, fill = fill, sep = sep_load)`: input= must be a single character string containing a file name, a system command containing at least one space, a URL starting 'http[s]://', 'ftp[s]://' or 'file://', or, the input data itself containing at least one \n or \r
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_dia(d_fname, nThread = 2)) at test-convert_dia.R:21:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_dia(d_fname, nThread = 2)
   4.   └─parseRPDR:::load_base(...)
   5.     └─data.table::fread(...)
  ── Error ('test-convert_enc.R:21:1'): (code run outside of `test_that()`) ──────
  Error in `data.table::fread(file, showProgress = FALSE, colClasses = "character", 
      nThread = nThread, fill = fill, sep = sep_load)`: input= must be a single character string containing a file name, a system command containing at least one space, a URL starting 'http[s]://', 'ftp[s]://' or 'file://', or, the input data itself containing at least one \n or \r
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_enc(d_fname, nThread = 2)) at test-convert_enc.R:21:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_enc(d_fname, nThread = 2)
   4.   └─parseRPDR:::load_base(...)
   5.     └─data.table::fread(...)
  ── Error ('test-convert_lab.R:21:1'): (code run outside of `test_that()`) ──────
  Error in `data.table::fread(file, showProgress = FALSE, colClasses = "character", 
      nThread = nThread, fill = fill, sep = sep_load)`: input= must be a single character string containing a file name, a system command containing at least one space, a URL starting 'http[s]://', 'ftp[s]://' or 'file://', or, the input data itself containing at least one \n or \r
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_lab(d_fname, nThread = 2)) at test-convert_lab.R:21:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_lab(d_fname, nThread = 2)
   4.   └─parseRPDR:::load_base(...)
   5.     └─data.table::fread(...)
  ── Error ('test-convert_med.R:21:1'): (code run outside of `test_that()`) ──────
  Error in `data.table::fread(file, showProgress = FALSE, colClasses = "character", 
      nThread = nThread, fill = fill, sep = sep_load)`: input= must be a single character string containing a file name, a system command containing at least one space, a URL starting 'http[s]://', 'ftp[s]://' or 'file://', or, the input data itself containing at least one \n or \r
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_med(d_fname, nThread = 2)) at test-convert_med.R:21:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_med(d_fname, nThread = 2)
   4.   └─parseRPDR:::load_base(...)
   5.     └─data.table::fread(...)
  ── Error ('test-convert_notes.R:21:1'): (code run outside of `test_that()`) ────
  Error in `1:max(which_rows[[x]])`: result would be too long a vector
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_notes(d_fname, type = "rad", nThread = 2)) at test-convert_notes.R:21:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_notes(d_fname, type = "rad", nThread = 2)
   4.   └─base::lapply(...)
   5.     └─parseRPDR (local) FUN(X[[i]], ...)
   6.       ├─base::paste(...)
   7.       └─base::paste(record[1:max(which_rows[[x]])], collapse = " ")
  ── Error ('test-convert_phy.R:21:1'): (code run outside of `test_that()`) ──────
  Error in `data.table::fread(file, showProgress = FALSE, colClasses = "character", 
      nThread = nThread, fill = fill, sep = sep_load)`: input= must be a single character string containing a file name, a system command containing at least one space, a URL starting 'http[s]://', 'ftp[s]://' or 'file://', or, the input data itself containing at least one \n or \r
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_phy(d_fname, nThread = 2)) at test-convert_phy.R:21:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_phy(d_fname, nThread = 2)
   4.   └─parseRPDR:::load_base(...)
   5.     └─data.table::fread(...)
  ── Error ('test-convert_prc.R:21:1'): (code run outside of `test_that()`) ──────
  Error in `split.default(v, sort(rep_len(1:nThread, length(v))))`: first argument must be a vector
  Backtrace:
       ▆
    1. ├─base::suppressMessages(load_prc(d_fname, nThread = 2)) at test-convert_prc.R:21:1
    2. │ └─base::withCallingHandlers(...)
    3. └─parseRPDR::load_prc(d_fname, nThread = 2)
    4.   └─base::lapply(...)
    5.     └─parseRPDR (local) FUN(X[[i]], ...)
    6.       ├─base::suppressMessages(...)
    7.       │ └─base::withCallingHandlers(...)
    8.       └─parseRPDR:::load_base(...)
    9.         └─parseRPDR::pretty_mrn(...)
   10.           ├─base::split(v, sort(rep_len(1:nThread, length(v))))
   11.           └─base::split.default(v, sort(rep_len(1:nThread, length(v))))
  ── Error ('test-convert_rfv.R:21:1'): (code run outside of `test_that()`) ──────
  Error in `data.table::fread(file, showProgress = FALSE, colClasses = "character", 
      nThread = nThread, fill = fill, sep = sep_load)`: input= must be a single character string containing a file name, a system command containing at least one space, a URL starting 'http[s]://', 'ftp[s]://' or 'file://', or, the input data itself containing at least one \n or \r
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_rfv(d_fname, nThread = 2)) at test-convert_rfv.R:21:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_rfv(d_fname, nThread = 2)
   4.   └─parseRPDR:::load_base(...)
   5.     └─data.table::fread(...)
  ── Error ('test-all_ids_mi2b2.R:20:1'): (code run outside of `test_that()`) ────
  Error in `data.table::fread(file, showProgress = FALSE, colClasses = "character", 
      nThread = nThread, fill = fill, sep = sep_load)`: input= must be a single character string containing a file name, a system command containing at least one space, a URL starting 'http[s]://', 'ftp[s]://' or 'file://', or, the input data itself containing at least one \n or \r
  Backtrace:
      ▆
   1. ├─base::suppressMessages(load_mrn(d_fname, nThread = 1)) at test-all_ids_mi2b2.R:20:1
   2. │ └─base::withCallingHandlers(...)
   3. └─parseRPDR::load_mrn(d_fname, nThread = 1)
   4.   └─parseRPDR:::load_base(...)
   5.     └─data.table::fread(...)
  ── Error ('test-export_notes.R:24:1'): (code run outside of `test_that()`) ─────
  Error in `if (length(res) == 0 || res == -1) {
      return(list(path = path, extension = ""))
  }`: missing value where TRUE/FALSE needed
  Backtrace:
      ▆
   1. ├─base::suppressMessages(...) at test-export_notes.R:24:1
   2. │ └─base::withCallingHandlers(...)
   3. ├─parseRPDR::load_notes(...)
   4. │ └─readr::read_lines(...)
   5. │   └─vroom::vroom_lines(...)
   6. │     └─vroom:::vroom_(...)
   7. └─vroom (local) `<fn>`(NA_character_)
   8.   └─vroom:::split_path_ext(basename_utf8(path))
  
  [ FAIL 33 | WARN 3 | SKIP 0 | PASS 66 ]
  Error: Test failures
  Execution halted
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR