* using log directory 'd:/RCompile/CRANincoming/R-devel/panelPomp.Rcheck' * using R Under development (unstable) (2024-12-07 r87428 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.3.0 GNU Fortran (GCC) 13.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'panelPomp/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'panelPomp' version '1.5.0.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... [43s] OK * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'panelPomp' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [59s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [122s] OK Running '_options.R' Comparing '_options.Rout' to '_options.Rout.save' ... OK Running 'aaa.R' Comparing 'aaa.Rout' to 'aaa.Rout.save' ... OK Running 'contacts.R' [12s] Comparing 'contacts.Rout' to 'contacts.Rout.save' ... OK Running 'get_col_row.R' Comparing 'get_col_row.Rout' to 'get_col_row.Rout.save' ... OK Running 'mif2.R' Comparing 'mif2.Rout' to 'mif2.Rout.save' ... OK Running 'mif2_intern.R' Comparing 'mif2_intern.Rout' to 'mif2_intern.Rout.save' ... OK Running 'mif2_methods.R' Comparing 'mif2_methods.Rout' to 'mif2_methods.Rout.save' ... OK Running 'panelGompertz.R' Comparing 'panelGompertz.Rout' to 'panelGompertz.Rout.save' ... OK Running 'panelGompertzLikelihood.R' Comparing 'panelGompertzLikelihood.Rout' to 'panelGompertzLikelihood.Rout.save' ... OK Running 'panelMeasles.R' [29s] Comparing 'panelMeasles.Rout' to 'panelMeasles.Rout.save' ... OK Running 'panelPomp.R' Comparing 'panelPomp.Rout' to 'panelPomp.Rout.save' ... OK Running 'panelPomp_methods.R' Comparing 'panelPomp_methods.Rout' to 'panelPomp_methods.Rout.save' ... OK Running 'panelRandomWalk.R' Comparing 'panelRandomWalk.Rout' to 'panelRandomWalk.Rout.save' ... OK Running 'panel_designs.R' Comparing 'panel_designs.Rout' to 'panel_designs.Rout.save' ... OK Running 'panel_loglik.R' Comparing 'panel_loglik.Rout' to 'panel_loglik.Rout.save' ... OK Running 'params.R' Comparing 'params.Rout' to 'params.Rout.save' ... OK Running 'pfilter.R' Comparing 'pfilter.Rout' to 'pfilter.Rout.save' ... OK Running 'pfilter_methods.R' Comparing 'pfilter_methods.Rout' to 'pfilter_methods.Rout.save' ... OK Running 'plot.R' Comparing 'plot.Rout' to 'plot.Rout.save' ... OK Running 'print-results.R' Comparing 'print-results.Rout' to 'print-results.Rout.save' ... OK Running 'seeded-results.R' Comparing 'seeded-results.Rout' to 'seeded-results.Rout.save' ... OK Running 'simulate.R' Comparing 'simulate.Rout' to 'simulate.Rout.save' ... OK Running 'specificShared.R' Comparing 'specificShared.Rout' to 'specificShared.Rout.save' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... [22s] OK * checking HTML version of manual ... OK * DONE Status: OK