R Under development (unstable) (2024-09-06 r87103 ucrt) -- "Unsuffered Consequences"
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> if (file.exists("_options.R")) source("_options.R")
> library(panelPomp,quietly=TRUE)
> 
> TESTS_PASS <- NULL
> test <- function(expr1,expr2,all="TESTS_PASS",env=parent.frame(),...)
+   panelPomp:::test(expr1,expr2,all=all,env=env,...)
> 
> g <- panelGompertz(N=5,U=2)
> estNames<- c("r",paste0("tau[unit",1:length(g),"]"))
> theta_start <- coef(g)[estNames]
> gLik <- panelGompertzLikelihood(theta_start,g,coef(g))
> gLik
[1] -2.122622
> 
> pomp::stew(file="panelGompertzLikelihood.rda",seed=2358,{
+   g_pfLik <- logLik(pfilter(g,Np=5000))
+ })
> test(abs(g_pfLik-gLik)<1,TRUE)
[1] TRUE
> 
> gMLE <- optim(
+     par=theta_start,
+     fn=panelGompertzLikelihood,
+     panelPompObject=g,
+     params=coef(g),
+     hessian=TRUE,
+     control=list(trace=0,fnscale=-1)
+   )
> 
> gMLE$val
[1] -0.6954027
> gMLE$par
          r  tau[unit1]  tau[unit2] 
-0.05145418  0.14961755  0.17785801 
> theta_start
         r tau[unit1] tau[unit2] 
       0.1        0.1        0.1 
> 
> ## check whether all tests passed
> all(get(eval(formals(test))$all))
[1] TRUE
> if (!all(get(eval(formals(test))$all))) stop("Not all tests passed!")
> 
> proc.time()
   user  system elapsed 
   1.12    0.04    2.82