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Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(pam) > > test_check("pam") eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced skipped file: 20231123_07.csv because of error: Error in doTryCatch(return(expr), name, parentenv, handler): failed to calculate sdiff with eilers_peeters platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced skipped file: 20231214_08.csv because of error: Error in value[[3L]](cond): error while calculating vollenweider model: Error in nlsModel(formula, mf, start, wts): singular gradient matrix at initial parameter estimates skipped file: 20231214_09.csv because of error: Error in doTryCatch(return(expr), name, parentenv, handler): failed to calculate sdiff with eilers_peeters skipped file: 20231214_10.csv because of error: Error in doTryCatch(return(expr), name, parentenv, handler): failed to calculate sdiff with eilers_peeters eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced skipped file: 20231214_12.csv because of error: Error in value[[3L]](cond): error while calculating vollenweider model: Error in nlsModel(formula, mf, start, wts): singular gradient matrix at initial parameter estimates skipped file: 20231214_13.csv because of error: Error in doTryCatch(return(expr), name, parentenv, handler): failed to calculate sdiff with eilers_peeters eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced skipped file: 20231123_07.csv because of error: Error in doTryCatch(return(expr), name, parentenv, handler): failed to calculate sdiff with eilers_peeters platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced skipped file: 20231214_08.csv because of error: Error in value[[3L]](cond): error while calculating vollenweider model: Error in nlsModel(formula, mf, start, wts): singular gradient matrix at initial parameter estimates skipped file: 20231214_09.csv because of error: Error in doTryCatch(return(expr), name, parentenv, handler): failed to calculate sdiff with eilers_peeters skipped file: 20231214_10.csv because of error: Error in doTryCatch(return(expr), name, parentenv, handler): failed to calculate sdiff with eilers_peeters eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced skipped file: 20231214_12.csv because of error: Error in value[[3L]](cond): error while calculating vollenweider model: Error in nlsModel(formula, mf, start, wts): singular gradient matrix at initial parameter estimates skipped file: 20231214_13.csv because of error: Error in doTryCatch(return(expr), name, parentenv, handler): failed to calculate sdiff with eilers_peeters eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced eilers peeters: failed to calculate pm: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate ik: warning: simpleWarning in sqrt(a * c): NaNs produced eilers peeters: failed to calculate im: warning: simpleWarning in sqrt(c/a): NaNs produced eilers peeters: failed to calculate w: warning: simpleWarning in sqrt(a * c): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced platt: failed to calculate im: warning: simpleWarning in log((alpha + beta)/beta): NaNs produced [ FAIL 0 | WARN 4 | SKIP 0 | PASS 200 ] [ FAIL 0 | WARN 4 | SKIP 0 | PASS 200 ] > > proc.time() user system elapsed 30.76 3.21 34.14