downloading reverse dependencies ...
downloading cornet_0.0.9.tar.gz ... ok
downloading FuzzySimRes_0.4.3.tar.gz ... ok
downloading joinet_0.0.10.tar.gz ... ok

installing dependencies ‘ashr’, ‘cornet’, ‘CorShrink’, ‘palasso’

Warning: package ‘CorShrink’ is not available for this version of R

A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages
also installing the dependency ‘etrunct’

begin installing package ‘etrunct’
begin installing package ‘palasso’
* installing *source* package ‘etrunct’ ...
** package ‘etrunct’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (etrunct)
begin installing package ‘ashr’
* installing *source* package ‘palasso’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (palasso)
begin installing package ‘cornet’
* installing *source* package ‘cornet’ ...
** package ‘cornet’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cornet)
* installing *source* package ‘ashr’ ...
** package ‘ashr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpscZmET/R.INSTALL9a95a21350735/ashr/src'
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c MixSquarem.cpp -o MixSquarem.o
MixSquarem.cpp: In function ‘Rcpp::List squarem1(Rcpp::NumericVector, Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::List)’:
MixSquarem.cpp:65:56: warning: ‘alpha’ may be used uninitialized [-Wmaybe-uninitialized]
   65 |     double sr2_scalar,sq2_scalar,sv2_scalar,srv_scalar,alpha,stepmin,stepmax;
      |                                                        ^~~~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o ashr.so MixSquarem.o RcppExports.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpscZmET/R.INSTALL9a95a21350735/ashr/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ashr/00new/ashr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ashr)

checking palasso_1.0.0.tar.gz ...
checking cornet_0.0.9.tar.gz ...
checking FuzzySimRes_0.4.3.tar.gz ...
checking joinet_0.0.10.tar.gz ...

Depends:
Package: palasso
  Depends: R (>= 3.0.0)
  Imports: glmnet, Matrix, survival

Timings:
          user system elapsed
palasso 40.125  5.356  47.668

Results:
Check status summary:
                  NOTE OK
  Source packages    1  0
  Reverse depends    0  3

Check results summary:
palasso ... NOTE
* checking CRAN incoming feasibility ... [6s/7s] NOTE
rdepends_cornet ... OK
rdepends_FuzzySimRes ... OK
rdepends_joinet ... OK