library(pROC) data(aSAH) context("DeLong Placements C++ code works") for (percent in c(FALSE, TRUE)) { for (marker in c("ndka", "wfns", "s100b")) { desc <- sprintf("delongPlacementsCpp runs with %s (percent = %s)", marker, percent) r <- roc(aSAH$outcome, aSAH[[marker]], percent = percent) test_that(desc, { placements <- pROC:::delongPlacementsCpp(r) expect_equal(placements, expected.placements[[marker]][["forward"]]) }) } for (marker in c("ndka", "wfns", "s100b")) { desc <- sprintf("delongPlacementsCpp runs with reversed levels and %s (percent = %s)", marker, percent) r <- roc(aSAH$outcome, aSAH[[marker]], levels = c("Poor", "Good"), percent = percent) test_that(desc, { placements <- pROC:::delongPlacementsCpp(r) expect_identical(names(placements), c("theta", "X", "Y")) }) } for (marker in c("ndka", "wfns", "s100b")) { desc <- sprintf("delongPlacementsCpp runs with reversed direction and %s (percent = %s)", marker, percent) r <- roc(aSAH$outcome, aSAH[[marker]], direction = ">", percent = percent) test_that(desc, { placements <- pROC:::delongPlacementsCpp(r) expect_identical(names(placements), c("theta", "X", "Y")) }) } for (marker in c("ndka", "wfns", "s100b")) { desc <- sprintf("delongPlacementsCpp runs with reversed levels reversed direction and %s (percent = %s)", marker, percent) r <- roc(aSAH$outcome, aSAH[[marker]], levels = c("Poor", "Good"), direction = ">", percent = percent) test_that(desc, { placements <- pROC:::delongPlacementsCpp(r) expect_identical(names(placements), c("theta", "X", "Y")) }) } }