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Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(outstandR) > > test_check("outstandR") Applying continuity correction: 0.50 log mean used log mean used user-supplied marginals. user-supplied marginals. user-supplied marginals. user-supplied marginals. user-supplied marginals. user-supplied marginals. Attaching package: 'dplyr' The following object is masked from 'package:testthat': matches The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union SAMPLING FOR MODEL 'continuous' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0.001156 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 11.56 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 1: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 1: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 1: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 1: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 1: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 1: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 1: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 1: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 1: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 1: Iteration: 2000 / 2000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.241 seconds (Warm-up) Chain 1: 0.248 seconds (Sampling) Chain 1: 0.489 seconds (Total) Chain 1: SAMPLING FOR MODEL 'continuous' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 1.9e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.19 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 2: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 2: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 2: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 2: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 2: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 2: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 2: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 2: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 2: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 2: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 2: Iteration: 2000 / 2000 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.225 seconds (Warm-up) Chain 2: 0.251 seconds (Sampling) Chain 2: 0.476 seconds (Total) Chain 2: SAMPLING FOR MODEL 'continuous' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 1.7e-05 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.17 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 3: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 3: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 3: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 3: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 3: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 3: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 3: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 3: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 3: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 3: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 3: Iteration: 2000 / 2000 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 0.222 seconds (Warm-up) Chain 3: 0.264 seconds (Sampling) Chain 3: 0.486 seconds (Total) Chain 3: SAMPLING FOR MODEL 'continuous' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 2.1e-05 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.21 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 4: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 4: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 4: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 4: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 4: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 4: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 4: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 4: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 4: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 4: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 4: Iteration: 2000 / 2000 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 0.263 seconds (Warm-up) Chain 4: 0.27 seconds (Sampling) Chain 4: 0.533 seconds (Total) Chain 4: No id variables; using all as measure variables No id variables; using all as measure variables No id variables; using all as measure variables No id variables; using all as measure variables SAMPLING FOR MODEL 'continuous' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 3.4e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.34 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 1: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 1: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 1: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 1: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 1: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 1: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 1: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 1: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 1: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 1: Iteration: 2000 / 2000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.261 seconds (Warm-up) Chain 1: 0.204 seconds (Sampling) Chain 1: 0.465 seconds (Total) Chain 1: SAMPLING FOR MODEL 'continuous' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 1.7e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.17 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 2: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 2: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 2: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 2: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 2: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 2: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 2: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 2: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 2: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 2: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 2: Iteration: 2000 / 2000 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.25 seconds (Warm-up) Chain 2: 0.278 seconds (Sampling) Chain 2: 0.528 seconds (Total) Chain 2: SAMPLING FOR MODEL 'continuous' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 1.5e-05 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.15 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 3: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 3: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 3: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 3: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 3: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 3: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 3: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 3: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 3: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 3: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 3: Iteration: 2000 / 2000 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 0.168 seconds (Warm-up) Chain 3: 0.234 seconds (Sampling) Chain 3: 0.402 seconds (Total) Chain 3: SAMPLING FOR MODEL 'continuous' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 1.9e-05 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.19 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 4: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 4: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 4: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 4: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 4: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 4: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 4: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 4: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 4: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 4: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 4: Iteration: 2000 / 2000 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 0.217 seconds (Warm-up) Chain 4: 0.279 seconds (Sampling) Chain 4: 0.496 seconds (Total) Chain 4: SAMPLING FOR MODEL 'continuous' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 4.3e-05 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0.43 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 1: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 1: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 1: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 1: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 1: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 1: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 1: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 1: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 1: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 1: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 1: Iteration: 2000 / 2000 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 0.194 seconds (Warm-up) Chain 1: 0.245 seconds (Sampling) Chain 1: 0.439 seconds (Total) Chain 1: SAMPLING FOR MODEL 'continuous' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 2.2e-05 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.22 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 2: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 2: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 2: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 2: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 2: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 2: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 2: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 2: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 2: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 2: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 2: Iteration: 2000 / 2000 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 0.224 seconds (Warm-up) Chain 2: 0.279 seconds (Sampling) Chain 2: 0.503 seconds (Total) Chain 2: SAMPLING FOR MODEL 'continuous' NOW (CHAIN 3). Chain 3: Chain 3: Gradient evaluation took 1.9e-05 seconds Chain 3: 1000 transitions using 10 leapfrog steps per transition would take 0.19 seconds. Chain 3: Adjust your expectations accordingly! Chain 3: Chain 3: Chain 3: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 3: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 3: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 3: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 3: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 3: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 3: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 3: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 3: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 3: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 3: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 3: Iteration: 2000 / 2000 [100%] (Sampling) Chain 3: Chain 3: Elapsed Time: 0.245 seconds (Warm-up) Chain 3: 0.26 seconds (Sampling) Chain 3: 0.505 seconds (Total) Chain 3: SAMPLING FOR MODEL 'continuous' NOW (CHAIN 4). Chain 4: Chain 4: Gradient evaluation took 1.6e-05 seconds Chain 4: 1000 transitions using 10 leapfrog steps per transition would take 0.16 seconds. Chain 4: Adjust your expectations accordingly! Chain 4: Chain 4: Chain 4: Iteration: 1 / 2000 [ 0%] (Warmup) Chain 4: Iteration: 200 / 2000 [ 10%] (Warmup) Chain 4: Iteration: 400 / 2000 [ 20%] (Warmup) Chain 4: Iteration: 600 / 2000 [ 30%] (Warmup) Chain 4: Iteration: 800 / 2000 [ 40%] (Warmup) Chain 4: Iteration: 1000 / 2000 [ 50%] (Warmup) Chain 4: Iteration: 1001 / 2000 [ 50%] (Sampling) Chain 4: Iteration: 1200 / 2000 [ 60%] (Sampling) Chain 4: Iteration: 1400 / 2000 [ 70%] (Sampling) Chain 4: Iteration: 1600 / 2000 [ 80%] (Sampling) Chain 4: Iteration: 1800 / 2000 [ 90%] (Sampling) Chain 4: Iteration: 2000 / 2000 [100%] (Sampling) Chain 4: Chain 4: Elapsed Time: 0.232 seconds (Warm-up) Chain 4: 0.313 seconds (Sampling) Chain 4: 0.545 seconds (Total) Chain 4: Treatment is guessed as: x [ FAIL 0 | WARN 43 | SKIP 5 | PASS 172 ] ══ Skipped tests (5) ═══════════════════════════════════════════════════════════ • empty test (5): 'test-IPD_stats.R:168:1', 'test-copula_userdefined_distns.R:434:1', 'test-gcomp.R:424:1', 'test-maicstc.R:166:1', 'test-maicstc.R:190:1' [ FAIL 0 | WARN 43 | SKIP 5 | PASS 172 ] > > proc.time() user system elapsed 132.51 6.98 139.56