downloading reverse dependencies ‘o2geosocial’, ‘o2ools’ trying URL 'file:///data/Repositories/CRAN/src/contrib/o2geosocial_1.1.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/o2ools_0.0.1.tar.gz' installing dependencies ‘epicontacts’, ‘incidence2’, ‘mixtree’, ‘outbreaker2’, ‘socialmixr’ also installing the dependencies ‘Luminescence’, ‘RCarb’, ‘fastymd’, ‘distory’, ‘RLumShiny’, ‘scatterD3’, ‘wpp2017’, ‘grates’, ‘ympes’, ‘treespace’ begin installing package ‘Luminescence’ begin installing package ‘RCarb’ begin installing package ‘fastymd’ begin installing package ‘distory’ begin installing package ‘scatterD3’ begin installing package ‘wpp2017’ begin installing package ‘ympes’ begin installing package ‘epicontacts’ begin installing package ‘outbreaker2’ * installing *source* package ‘wpp2017’ ... ** this is package ‘wpp2017’ version ‘1.2-3’ ** package ‘wpp2017’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (wpp2017) begin installing package ‘socialmixr’ * installing *source* package ‘ympes’ ... ** this is package ‘ympes’ version ‘1.9.0’ ** package ‘ympes’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ympes) * installing *source* package ‘fastymd’ ... ** this is package ‘fastymd’ version ‘0.1.4’ ** package ‘fastymd’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpaVqhXj/R.INSTALL2e09dcceda78a/fastymd/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c api.c -o api.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c civil_from_days.c -o civil_from_days.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c days_from_civil.c -o days_from_civil.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c epochdays.c -o epochdays.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o fastymd.so api.o civil_from_days.o days_from_civil.o epochdays.o init.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpaVqhXj/R.INSTALL2e09dcceda78a/fastymd/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fastymd/00new/fastymd/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastymd) begin installing package ‘grates’ * installing *source* package ‘RCarb’ ... ** this is package ‘RCarb’ version ‘0.1.7’ ** package ‘RCarb’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RCarb) * installing *source* package ‘scatterD3’ ... ** this is package ‘scatterD3’ version ‘1.0.1’ ** package ‘scatterD3’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scatterD3) * installing *source* package ‘epicontacts’ ... ** this is package ‘epicontacts’ version ‘1.1.4’ ** package ‘epicontacts’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (epicontacts) * installing *source* package ‘grates’ ... ** this is package ‘grates’ version ‘1.7.0’ ** package ‘grates’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (grates) begin installing package ‘incidence2’ * installing *source* package ‘socialmixr’ ... ** this is package ‘socialmixr’ version ‘0.4.0’ ** package ‘socialmixr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (socialmixr) * installing *source* package ‘distory’ ... ** this is package ‘distory’ version ‘1.4.5’ ** package ‘distory’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUGIVQw/R.INSTALL2e09ed774c3d21/distory/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c distory.c -o distory.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c newick.cpp -o newick.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c phydist_r.cpp -o phydist_r.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c treedist-stripped.cpp -o treedist-stripped.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o distory.so distory.o newick.o phydist_r.o treedist-stripped.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUGIVQw/R.INSTALL2e09ed774c3d21/distory/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-distory/00new/distory/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (distory) * installing *source* package ‘incidence2’ ... ** this is package ‘incidence2’ version ‘2.6.3’ ** package ‘incidence2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (incidence2) * installing *source* package ‘outbreaker2’ ... ** this is package ‘outbreaker2’ version ‘1.1.4’ ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzcFesN/R.INSTALL2e09ee404d9666/outbreaker2/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c internals.cpp -o internals.o internals.cpp: In function ‘Rcpp::IntegerVector cpp_find_descendents(Rcpp::IntegerVector, size_t)’: internals.cpp:114:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 114 | for (size_t j = 0; j < alpha.size(); j++) { | ~~^~~~~~~~~~~~~~ internals.cpp:115:18: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 115 | if (alpha[j] == i) n++; internals.cpp:121:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 121 | for (size_t j = 0; j < alpha.size(); j++) { | ~~^~~~~~~~~~~~~~ internals.cpp:122:18: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 122 | if (alpha[j] == i) { internals.cpp: In function ‘Rcpp::IntegerVector cpp_find_local_cases(Rcpp::IntegerVector, size_t)’: internals.cpp:169:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 169 | for (size_t j = 0; j < desc_i.size(); j++) { | ~~^~~~~~~~~~~~~~~ internals.cpp:178:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 178 | for (size_t j = 0; j < desc_alpha_i.size(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~~ internals.cpp:179:28: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 179 | if ( desc_alpha_i[j] != i) { internals.cpp: In function ‘Rcpp::List cpp_swap_cases(Rcpp::List, size_t)’: internals.cpp:251:21: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 251 | if (alpha_in[j] == i) { internals.cpp:253:28: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 253 | } else if (alpha_in[j] == x) { g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c likelihoods.cpp -o likelihoods.o likelihoods.cpp: In function ‘double cpp_ll_genetic(Rcpp::List, Rcpp::List, SEXP, Rcpp::RObject)’: likelihoods.cpp:114:40: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | if (kappa[j] < 1 || kappa[j] > K) { likelihoods.cpp:146:40: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 146 | if (kappa[j] < 1 || kappa[j] > K) { likelihoods.cpp: In function ‘double cpp_ll_timing_infections(Rcpp::List, Rcpp::List, SEXP, Rcpp::RObject)’: likelihoods.cpp:240:40: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 240 | if (kappa[j] < 1 || kappa[j] > K) { likelihoods.cpp:264:40: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 264 | if (kappa[j] < 1 || kappa[j] > K) { likelihoods.cpp: In function ‘double cpp_ll_timing_sampling(Rcpp::List, Rcpp::List, SEXP, Rcpp::RObject)’: likelihoods.cpp:322:32: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 322 | if (delay < 1 || delay > f_dens.size()) { | ~~~~~~^~~~~~~~~~~~~~~ likelihoods.cpp:334:32: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 334 | if (delay < 1 || delay > f_dens.size()) { | ~~~~~~^~~~~~~~~~~~~~~ likelihoods.cpp: In function ‘double cpp_ll_reporting(Rcpp::List, Rcpp::List, SEXP, Rcpp::RObject)’: likelihoods.cpp:402:40: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 402 | if (kappa[j] < 1 || kappa[j] > K) { likelihoods.cpp:415:40: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 415 | if (kappa[j] < 1 || kappa[j] > K) { g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c moves.cpp -o moves.o moves.cpp: In function ‘Rcpp::List cpp_move_kappa(Rcpp::List, Rcpp::List, Rcpp::List, Rcpp::RObject)’: moves.cpp:566:44: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 566 | if (new_kappa[i] < 1 || new_kappa[i] > K) { g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c priors.cpp -o priors.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o outbreaker2.so RcppExports.o internals.o likelihoods.o moves.o priors.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzcFesN/R.INSTALL2e09ee404d9666/outbreaker2/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-outbreaker2/00new/outbreaker2/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (outbreaker2) * installing *source* package ‘Luminescence’ ... ** this is package ‘Luminescence’ version ‘1.1.2’ ** package ‘Luminescence’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpb485K0/R.INSTALL2e09de45538913/Luminescence/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -include ../inst/include/RLum_Rf_rnbeta.h -I../inst/include -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -include ../inst/include/RLum_Rf_rnbeta.h -I../inst/include -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c create_UID.cpp -o create_UID.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -include ../inst/include/RLum_Rf_rnbeta.h -I../inst/include -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c src_EED_Calc_Overall_StatUncertainty.cpp -o src_EED_Calc_Overall_StatUncertainty.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -include ../inst/include/RLum_Rf_rnbeta.h -I../inst/include -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c src_ThermoChronometry.cpp -o src_ThermoChronometry.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -include ../inst/include/RLum_Rf_rnbeta.h -I../inst/include -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c src_analyse_IRSARRF_SRS.cpp -o src_analyse_IRSARRF_SRS.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -include ../inst/include/RLum_Rf_rnbeta.h -I../inst/include -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c src_create_RLumDataCurve_matrix.cpp -o src_create_RLumDataCurve_matrix.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -include ../inst/include/RLum_Rf_rnbeta.h -I../inst/include -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c src_fit_functions.cpp -o src_fit_functions.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -include ../inst/include/RLum_Rf_rnbeta.h -I../inst/include -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c src_get_XSYG_curve_values.cpp -o src_get_XSYG_curve_values.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o Luminescence.so RcppExports.o create_UID.o src_EED_Calc_Overall_StatUncertainty.o src_ThermoChronometry.o src_analyse_IRSARRF_SRS.o src_create_RLumDataCurve_matrix.o src_fit_functions.o src_get_XSYG_curve_values.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpb485K0/R.INSTALL2e09de45538913/Luminescence/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Luminescence/00new/Luminescence/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Luminescence) begin installing package ‘RLumShiny’ * installing *source* package ‘RLumShiny’ ... ** this is package ‘RLumShiny’ version ‘0.2.5’ ** package ‘RLumShiny’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RLumShiny) begin installing package ‘treespace’ * installing *source* package ‘treespace’ ... ** this is package ‘treespace’ version ‘1.1.4.4’ ** package ‘treespace’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpMtdPGS/R.INSTALL2e0d28b81801a/treespace/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CPP_update_combinations.cpp -o CPP_update_combinations.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o treespace.so CPP_update_combinations.o RcppExports.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpMtdPGS/R.INSTALL2e0d28b81801a/treespace/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-treespace/00new/treespace/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (treespace) begin installing package ‘mixtree’ * installing *source* package ‘mixtree’ ... ** this is package ‘mixtree’ version ‘0.0.1’ ** package ‘mixtree’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mixtree) checking outbreaker2_1.1.4.tar.gz ... checking o2geosocial_1.1.3.tar.gz ... checking o2ools_0.0.1.tar.gz ... Depends: Package: outbreaker2 Depends: R (>= 3.5.0) Imports: utils, methods, stats, grDevices, Rcpp, ape, ggplot2, magrittr, visNetwork LinkingTo: Rcpp Timings: user system elapsed outbreaker2 357.563 8.108 367.843 Results: Check status summary: OK Source packages 1 Reverse depends 2 Check results summary: outbreaker2 ... OK rdepends_o2geosocial ... OK rdepends_o2ools ... OK