* using log directory 'd:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck' * using R version 4.5.0 beta (2025-03-29 r88074 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'ottrpal/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'ottrpal' version '2.0.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... [13s] OK * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'ottrpal' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [13s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [198s] ERROR Running 'testthat.R' [198s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ottrpal) Use the authorize() function to begin. This gives the package the proper credentials to run. > > test_check("ottrpal") processing file: parent_doc.Rmd output file: parent_doc.knit.md "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS parent_doc.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output parent_doc.html --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\latex-div.lua" --embed-resources --standalone --variable bs3=TRUE --section-divs --template "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_03_31_17_05_17_11381\RtmpUnkour\rmarkdown-str52ac5232563f.html" Output created: parent_doc.html trying URL 'https://github.com/jhudsl/OTTR_Template/archive/refs/heads/main.zip' downloaded 30.3 MB ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template-main/01-intro.Rmd No URLs found ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template-main/02-chapter_of_course.Rmd Testing: https://www.linkedin.com Testing: https://www.youtube.com/embed/VOCYL-FNbr0 Testing: https://drive.google.com/file/d/1mm72K4V7fqpgAfWkr6b7HTZrc3f-T6AV/preview Testing: https://yihui.org Testing: https://docs.google.com/presentation/d/1YmwKdIy9BeQ3EShgZhvtb3MgR8P6iDX4DfFD65W_gdQ/edit#slide=id.gcc4fbee202_0_141 Testing: https://www.ottrproject.org/getting_started.html Testing: https://github.com/jhudsl/OTTR_Template/wiki/Using-Docker#starting-a-new-docker-image Testing: https://www.rstudio.com/wp-content/uploads/2015/02/rmarkdown-cheatsheet.pdf Testing: https://www.youtube.com/embed/VOCYL-FNbr0 Testing: https://rmarkdown.rstudio.com/lesson-3.html Testing: https://yihui.org Testing: https://yihui.org Testing: https://bookdown.org/yihui/rmarkdown-cookbook/custom-blocks.html Testing: https://jhudatascience.org/Reproducibility_in_Cancer_Informatics/managing-package-versions.html Testing: https://github.com/jhudsl/OTTR_Template Testing: https://jhudatascience.org/OTTR_Template/ Testing: https://tips.uark.edu/using-blooms-taxonomy/ Testing: https://www.youtube.com/embed/VOCYL-FNbr0 Testing: https://drive.google.com/file/d/1mm72K4V7fqpgAfWkr6b7HTZrc3f-T6AV/preview Testing: https://yihui.org ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template-main/References.Rmd No URLs found ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template-main/index.Rmd No URLs found ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template-main/quizzes/quiz_ch1.md No URLs found ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template-main/url_test_error.md Testing: https://notawebsiteaaaaaaa.com 1 Saved to: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template-main/check_reports/url_checks.tsv Rows: 1 Columns: 3 -- Column specification -------------------------------------------------------- Delimiter: "\t" chr (3): urls, urls_status, file i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. trying URL 'https://github.com/fhdsl/OTTR_Quarto/archive/refs/heads/main.zip' downloaded 3.4 MB ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Quarto-main/404.qmd Testing: https://github.com/fhdsl/OTTR_Quarto/issues/new ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Quarto-main/conclusion.qmd No URLs found ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Quarto-main/first-section-new-chapter.qmd Testing: https://www.youtube.com/embed/VOCYL-FNbr0 Testing: https://drive.google.com/file/d/1mm72K4V7fqpgAfWkr6b7HTZrc3f-T6AV/preview Testing: https://yihui.org Testing: https://docs.google.com/presentation/d/1Dw_rBb1hySN_76xh9-x5J2dWF_das9BAUjQigf2fN-E/edit#slide=id.g252f18e2576_1_0 Testing: https://github.com/jhudsl/OTTR_Template/wiki/Using-Docker#starting-a-new-docker-image Testing: https://www.rstudio.com/wp-content/uploads/2015/02/rmarkdown-cheatsheet.pdf Testing: https://www.youtube.com/embed/VOCYL-FNbr0 Testing: https://rmarkdown.rstudio.com/lesson-3.html Testing: https://yihui.org Testing: https://yihui.org Testing: https://bookdown.org/yihui/rmarkdown-cookbook/custom-blocks.html Testing: https://www.youtube.com/embed/VOCYL-FNbr0 Testing: https://drive.google.com/file/d/1mm72K4V7fqpgAfWkr6b7HTZrc3f-T6AV/preview Testing: https://yihui.org ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Quarto-main/index.qmd Testing: https://itcr.cancer.gov/) called the Informatics Technology for Cancer Research Education Resource. This material was created by the ITCR Training Network (ITN) which is a collaborative effort of researchers around the United States to support cancer informatics and data science training through resources, technology, and events. This initiative is funded by the following grant: [National Cancer Institute (NCI Testing: https://www.ottrproject.org/ Testing: https://leanpub.com/ Testing: https://www.coursera.org/) (but it is not available for free on Coursera Testing: https://github.com/fhdsl/OTTR_Quarto ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Quarto-main/intro.qmd No URLs found ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Quarto-main/manuscript/Conclusion.md Testing: http://hutchdatascience.org/OTTR_Quarto/conclusion.html ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Quarto-main/manuscript/Introduction-to-the-Course.md Testing: http://hutchdatascience.org/OTTR_Quarto/intro.html ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Quarto-main/manuscript/New-Chapter.md Testing: http://hutchdatascience.org/OTTR_Quarto/third-section-new-chapter.html ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Quarto-main/references.qmd Testing: (https://ieeexplore.ieee.org/document/6773024 Testing: (https://mind.oxfordjournals.org/content/LIX/236/433 Testing: (https://www.cs.virginia.edu/~robins/Turing_Paper_1936.pdf Testing: (https://dl.acm.org/doi/10.1145/358198.358210 Testing: (https://research.google.com/archive/gfs-sosp2003.pdf ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Quarto-main/url_test_error.md Testing: https://notawebsiteaaaaaaa.com 1 Saved to: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Quarto-main/check_reports/url_checks.tsv Rows: 1 Columns: 3 -- Column specification -------------------------------------------------------- Delimiter: "\t" chr (3): urls, urls_status, file i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. trying URL 'https://github.com/jhudsl/OTTR_Template_Website/archive/refs/heads/main.zip' downloaded 9.5 MB ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template_Website-main/contact.Rmd No URLs found ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template_Website-main/editing.Rmd Testing: https://www.ottrproject.org/editing_website.html Testing: https://fontawesome.com/ Testing: https://www.w3schools.com/bootstrap/bootstrap_ref_comp_glyphs.asp ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template_Website-main/git_actions.Rmd No URLs found ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template_Website-main/hosting.Rmd Testing: https://username.github.io/repository_name/ Testing: https://pages.github.com/ ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template_Website-main/index.Rmd No URLs found ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template_Website-main/setup.Rmd Testing: https://github.com/jhudsl/OTTR_Template_Website Testing: https://docs.github.com/en/authentication/keeping-your-account-and-data-secure/creating-a-personal-access-token ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template_Website-main/style.Rmd Testing: https://bookdown.org/yihui/blogdown/themes.html Testing: https://www.w3schools.com/css/ Testing: https://htmlcolorcodes.com/ Testing: https://www.rstudio.com/wp-content/uploads/2015/02/rmarkdown-cheatsheet.pdf Testing: https://favicon.io/favicon-converter/ ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template_Website-main/url_test_error.md Testing: https://notawebsiteaaaaaaa.com 13 Saved to: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template_Website-main/check_reports/url_checks.tsv Rows: 13 Columns: 3 -- Column specification -------------------------------------------------------- Delimiter: "\t" chr (3): urls, urls_status, file i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. trying URL 'https://github.com/fhdsl/OTTR_Quarto_Website/archive/refs/heads/main.zip' downloaded 9.4 MB ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Quarto_Website-main/contact.qmd No URLs found ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Quarto_Website-main/editing.qmd Testing: https://www.ottrproject.org/editing_website.html Testing: https://fontawesome.com/ Testing: https://www.w3schools.com/bootstrap/bootstrap_ref_comp_glyphs.asp ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Quarto_Website-main/git_actions.qmd No URLs found ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Quarto_Website-main/hosting.qmd Testing: https://username.github.io/repository_name/ Testing: https://pages.github.com/ ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Quarto_Website-main/index.qmd Testing: https://github.com/fhdsl/OTTR_Quarto Testing: https://www.ottrproject.org/ ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Quarto_Website-main/setup.qmd Testing: https://github.com/jhudsl/OTTR_Template_Website Testing: https://docs.github.com/en/authentication/keeping-your-account-and-data-secure/creating-a-personal-access-token ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Quarto_Website-main/style.qmd Testing: https://bookdown.org/yihui/blogdown/themes.html Testing: https://www.w3schools.com/css/ Testing: https://htmlcolorcodes.com/ Testing: https://quarto.org/docs/websites/#workflow Testing: https://favicon.io/favicon-converter/ ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Quarto_Website-main/url_test_error.md Testing: https://notawebsiteaaaaaaa.com 15 Saved to: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Quarto_Website-main/check_reports/url_checks.tsv Rows: 15 Columns: 3 -- Column specification -------------------------------------------------------- Delimiter: "\t" chr (3): urls, urls_status, file i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. 1 trying URL 'https://github.com/jhudsl/OTTR_Template/archive/refs/heads/main.zip' downloaded 30.3 MB ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template-main/01-intro.Rmd No URLs found ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template-main/02-chapter_of_course.Rmd Testing: https://www.linkedin.com Testing: https://www.youtube.com/embed/VOCYL-FNbr0 Testing: https://drive.google.com/file/d/1mm72K4V7fqpgAfWkr6b7HTZrc3f-T6AV/preview Testing: https://yihui.org Testing: https://docs.google.com/presentation/d/1YmwKdIy9BeQ3EShgZhvtb3MgR8P6iDX4DfFD65W_gdQ/edit#slide=id.gcc4fbee202_0_141 Testing: https://www.ottrproject.org/getting_started.html Testing: https://github.com/jhudsl/OTTR_Template/wiki/Using-Docker#starting-a-new-docker-image Testing: https://www.rstudio.com/wp-content/uploads/2015/02/rmarkdown-cheatsheet.pdf Testing: https://www.youtube.com/embed/VOCYL-FNbr0 Testing: https://rmarkdown.rstudio.com/lesson-3.html Testing: https://yihui.org Testing: https://yihui.org Testing: https://bookdown.org/yihui/rmarkdown-cookbook/custom-blocks.html Testing: https://jhudatascience.org/Reproducibility_in_Cancer_Informatics/managing-package-versions.html Testing: https://github.com/jhudsl/OTTR_Template Testing: https://jhudatascience.org/OTTR_Template/ Testing: https://tips.uark.edu/using-blooms-taxonomy/ Testing: https://www.youtube.com/embed/VOCYL-FNbr0 Testing: https://drive.google.com/file/d/1mm72K4V7fqpgAfWkr6b7HTZrc3f-T6AV/preview Testing: https://yihui.org ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template-main/References.Rmd No URLs found ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template-main/index.Rmd No URLs found ##### Testing URLs from file: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template-main/quizzes/quiz_ch1.md No URLs found 0 Saved to: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template-main/check_reports/url_checks.tsv 1 Saved to: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template-main/check_reports/spell_check_results.tsv Checking quiz: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template-main/quizzes/quiz_ch1.md Checking question: First question to as ... in quiz: quiz_ch1.md Checking question: Question example wit ... in quiz: quiz_ch1.md Checking question: Second question to a ... in quiz: quiz_ch1.md Checking question: A more complicated e ... in quiz: quiz_ch1.md Checking question: A question in which ... in quiz: quiz_ch1.md No question errors to report! 1 Saved to: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template-main/check_reports/question_error_report.tsv --2025-03-31 17:13:54-- https://raw.githubusercontent.com/jhudsl/OTTR_Template/refs/heads/main/.github/workflows/check-url.yml Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 4064 (4.0K) [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd/.github/workflows/check-url.yml' 0K ... 100% 9.65M=0s 2025-03-31 17:13:54 (9.65 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd/.github/workflows/check-url.yml' saved [4064/4064] --2025-03-31 17:13:54-- https://raw.githubusercontent.com/jhudsl/OTTR_Template/refs/heads/main/.github/workflows/pull_request.yml Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 9954 (9.7K) [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd/.github/workflows/pull_request.yml' 0K ......... 100% 13.7M=0.001s 2025-03-31 17:13:54 (13.7 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd/.github/workflows/pull_request.yml' saved [9954/9954] --2025-03-31 17:13:54-- https://raw.githubusercontent.com/jhudsl/OTTR_Template/refs/heads/main/.github/workflows/delete-preview.yml Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 644 [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd/.github/workflows/delete-preview.yml' 0K 100% 22.8M=0s 2025-03-31 17:13:55 (22.8 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd/.github/workflows/delete-preview.yml' saved [644/644] --2025-03-31 17:13:55-- https://raw.githubusercontent.com/jhudsl/OTTR_Template/refs/heads/main/config_automation.yml Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 1085 (1.1K) [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd/config_automation.yml' 0K . 100% 25.9M=0s 2025-03-31 17:13:55 (25.9 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd/config_automation.yml' saved [1085/1085] --2025-03-31 17:13:55-- https://raw.githubusercontent.com/jhudsl/OTTR_Template/refs/heads/main/resources/dictionary.txt Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 560 [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd/resources/dictionary.txt' 0K 100% 12.4M=0s 2025-03-31 17:13:55 (12.4 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd/resources/dictionary.txt' saved [560/560] --2025-03-31 17:13:55-- https://raw.githubusercontent.com/jhudsl/OTTR_Template/refs/heads/main/resources/ignore-urls.txt Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. 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HTTP request sent, awaiting response... 200 OK Length: 162 [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd/assets/open-new-tab.html' 0K 100% 4.10M=0s 2025-03-31 17:13:58 (4.10 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd/assets/open-new-tab.html' saved [162/162] Rendering book in directory 'rmd' processing file: Course_Name.Rmd output file: Course_Name.knit.md "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS Course_Name.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output Course_Name.html --lua-filter "D:\RCompile\CRANpkg\lib\4.5\bookdown\rmarkdown\lua\custom-environment.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\latex-div.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\anchor-sections.lua" --metadata-file "D:\temp\2025_03_31_17_05_17_11381\RtmpUnkour\file52ac6b33ed3" --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template "D:\RCompile\CRANpkg\lib\4.5\bookdown\templates\gitbook.html" --highlight-style pygments --number-sections --css assets/style.css --mathjax --include-in-header "D:\temp\2025_03_31_17_05_17_11381\RtmpUnkour\rmarkdown-str52ac74d83585.html" --include-before-body "assets\big-image.html" --include-after-body "assets\footer.html" --include-after-body "assets\open-new-tab.html" Output created: docs/index.html --2025-03-31 17:14:01-- https://raw.githubusercontent.com/fhdsl/OTTR_Quarto/refs/heads/main/.github/workflows/check-url.yml Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... 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HTTP request sent, awaiting response... 200 OK Length: 9306 (9.1K) [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/quarto/.github/workflows/pull_request.yml' 0K ......... 100% 13.9M=0.001s 2025-03-31 17:14:01 (13.9 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/quarto/.github/workflows/pull_request.yml' saved [9306/9306] --2025-03-31 17:14:01-- https://raw.githubusercontent.com/fhdsl/OTTR_Quarto/refs/heads/main/.github/workflows/delete-preview.yml Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. 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HTTP request sent, awaiting response... 200 OK Length: 461918 (451K) [image/png] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/quarto/img/logo.png' 0K .......... .......... .......... .......... .......... 11% 14.8M 0s 50K .......... .......... .......... .......... .......... 22% 21.1M 0s 100K .......... .......... .......... .......... .......... 33% 15.0M 0s 150K .......... .......... .......... .......... .......... 44% 33.7M 0s 200K .......... .......... .......... .......... .......... 55% 31.8M 0s 250K .......... .......... .......... .......... .......... 66% 32.8M 0s 300K .......... .......... .......... .......... .......... 77% 34.8M 0s 350K .......... .......... .......... .......... .......... 88% 39.8M 0s 400K .......... .......... .......... .......... .......... 99% 46.8M 0s 450K . 100% 20.8G=0.02s 2025-03-31 17:14:06 (25.9 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/quarto/img/logo.png' saved [461918/461918] [1/2] index.qmd [2/2] intro.qmd Output created: docs\index.html --2025-03-31 17:14:38-- https://raw.githubusercontent.com/jhudsl/OTTR_Template_Website/refs/heads/main/.github/workflows/check-url.yml Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 3648 (3.6K) [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd_web/.github/workflows/check-url.yml' 0K ... 100% 10.3M=0s 2025-03-31 17:14:38 (10.3 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd_web/.github/workflows/check-url.yml' saved [3648/3648] --2025-03-31 17:14:38-- https://raw.githubusercontent.com/jhudsl/OTTR_Template_Website/refs/heads/main/.github/workflows/pull_request.yml Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. 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HTTP request sent, awaiting response... 200 OK Length: 644 [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd_web/.github/workflows/delete-preview.yml' 0K 100% 20.1M=0s 2025-03-31 17:14:39 (20.1 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd_web/.github/workflows/delete-preview.yml' saved [644/644] --2025-03-31 17:14:39-- https://raw.githubusercontent.com/jhudsl/OTTR_Template_Website/refs/heads/main/config_automation.yml Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 854 [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd_web/config_automation.yml' 0K 100% 18.9M=0s 2025-03-31 17:14:39 (18.9 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd_web/config_automation.yml' saved [854/854] --2025-03-31 17:14:39-- https://raw.githubusercontent.com/jhudsl/OTTR_Template_Website/refs/heads/main/resources/dictionary.txt Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 198 [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd_web/resources/dictionary.txt' 0K 100% 6.25M=0s 2025-03-31 17:14:40 (6.25 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd_web/resources/dictionary.txt' saved [198/198] --2025-03-31 17:14:40-- https://raw.githubusercontent.com/jhudsl/OTTR_Template_Website/refs/heads/main/resources/ignore-urls.txt Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 44 [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd_web/resources/ignore-urls.txt' 0K 100% 1.73M=0s 2025-03-31 17:14:40 (1.73 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd_web/resources/ignore-urls.txt' saved [44/44] --2025-03-31 17:14:40-- https://raw.githubusercontent.com/jhudsl/OTTR_Template_Website/refs/heads/main/resources/exclude_files.txt Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 99 [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd_web/resources/exclude_files.txt' 0K 100% 2.56M=0s 2025-03-31 17:14:40 (2.56 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd_web/resources/exclude_files.txt' saved [99/99] --2025-03-31 17:14:40-- https://raw.githubusercontent.com/jhudsl/OTTR_Template_Website/refs/heads/main/_site.yml Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 602 [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd_web/_site.yml' 0K 100% 17.8M=0s 2025-03-31 17:14:40 (17.8 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd_web/_site.yml' saved [602/602] --2025-03-31 17:14:41-- https://raw.githubusercontent.com/jhudsl/OTTR_Template_Website/refs/heads/main/styles.css Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 624 [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd_web/styles.css' 0K 100% 16.5M=0s 2025-03-31 17:14:41 (16.5 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd_web/styles.css' saved [624/624] --2025-03-31 17:14:41-- https://raw.githubusercontent.com/jhudsl/OTTR_Template_Website/refs/heads/main/.github/workflows/render-site.yml Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 2922 (2.9K) [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd_web/.github/workflows/render-site.yml' 0K .. 100% 7.32M=0s 2025-03-31 17:14:41 (7.32 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd_web/.github/workflows/render-site.yml' saved [2922/2922] --2025-03-31 17:14:41-- https://raw.githubusercontent.com/jhudsl/OTTR_Template_Website/refs/heads/main/resources/header.html Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 335 [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd_web/resources/header.html' 0K 100% 5.10M=0s 2025-03-31 17:14:42 (5.10 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/rmd_web/resources/header.html' saved [335/335] Rendering: rmd_web/index.Rmd "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS index.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output index.html --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\latex-div.lua" --variable bs3=TRUE --standalone --section-divs --template "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --include-before-body "D:\temp\2025_03_31_17_05_17_11381\RtmpUnkour\rmarkdown-str52ac3eac4c05.html" --variable navbar=1 --variable theme=bootstrap --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_03_31_17_05_17_11381\RtmpUnkour\rmarkdown-str52ac7c0e2929.html" [WARNING] This document format requires a nonempty element. Defaulting to 'index.knit' as the title. To specify a title, use 'title' in metadata or --metadata title="...". Rendering: rmd_web/page1.Rmd "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS page1.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output page1.html --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\latex-div.lua" --variable bs3=TRUE --standalone --section-divs --template "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --include-before-body "D:\temp\2025_03_31_17_05_17_11381\RtmpUnkour\rmarkdown-str52ac59e01096.html" --variable navbar=1 --variable theme=bootstrap --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_03_31_17_05_17_11381\RtmpUnkour\rmarkdown-str52ac7f17741a.html" [WARNING] This document format requires a nonempty <title> element. Defaulting to 'page1.knit' as the title. To specify a title, use 'title' in metadata or --metadata title="...". Output created: docs/index.html --2025-03-31 17:14:46-- https://raw.githubusercontent.com/fhdsl/OTTR_Quarto_Website/refs/heads/main/.github/workflows/check-url.yml Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 4064 (4.0K) [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/quarto_web/.github/workflows/check-url.yml' 0K ... 100% 8.68M=0s 2025-03-31 17:14:46 (8.68 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/quarto_web/.github/workflows/check-url.yml' saved [4064/4064] --2025-03-31 17:14:47-- https://raw.githubusercontent.com/fhdsl/OTTR_Quarto_Website/refs/heads/main/.github/workflows/pull_request.yml Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 7532 (7.4K) [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/quarto_web/.github/workflows/pull_request.yml' 0K ....... 100% 13.7M=0.001s 2025-03-31 17:14:47 (13.7 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/quarto_web/.github/workflows/pull_request.yml' saved [7532/7532] --2025-03-31 17:14:47-- https://raw.githubusercontent.com/fhdsl/OTTR_Quarto_Website/refs/heads/main/.github/workflows/delete-preview.yml Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 644 [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/quarto_web/.github/workflows/delete-preview.yml' 0K 100% 16.7M=0s 2025-03-31 17:14:47 (16.7 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/quarto_web/.github/workflows/delete-preview.yml' saved [644/644] --2025-03-31 17:14:47-- https://raw.githubusercontent.com/fhdsl/OTTR_Quarto_Website/refs/heads/main/config_automation.yml Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 682 [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/quarto_web/config_automation.yml' 0K 100% 28.7M=0s 2025-03-31 17:14:48 (28.7 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/quarto_web/config_automation.yml' saved [682/682] --2025-03-31 17:14:48-- https://raw.githubusercontent.com/fhdsl/OTTR_Quarto_Website/refs/heads/main/resources/dictionary.txt Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 202 [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/quarto_web/resources/dictionary.txt' 0K 100% 5.75M=0s 2025-03-31 17:14:48 (5.75 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/quarto_web/resources/dictionary.txt' saved [202/202] --2025-03-31 17:14:48-- https://raw.githubusercontent.com/fhdsl/OTTR_Quarto_Website/refs/heads/main/resources/ignore-urls.txt Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 44 [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/quarto_web/resources/ignore-urls.txt' 0K 100% 1.55M=0s 2025-03-31 17:14:48 (1.55 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/quarto_web/resources/ignore-urls.txt' saved [44/44] --2025-03-31 17:14:48-- https://raw.githubusercontent.com/fhdsl/OTTR_Quarto_Website/refs/heads/main/resources/exclude_files.txt Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 99 [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/quarto_web/resources/exclude_files.txt' 0K 100% 2.43M=0s 2025-03-31 17:14:49 (2.43 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/quarto_web/resources/exclude_files.txt' saved [99/99] --2025-03-31 17:14:49-- https://raw.githubusercontent.com/fhdsl/OTTR_Quarto_Website/refs/heads/main/_quarto.yml Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 534 [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/quarto_web/_quarto.yml' 0K 100% 16.6M=0s 2025-03-31 17:14:49 (16.6 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/quarto_web/_quarto.yml' saved [534/534] --2025-03-31 17:14:49-- https://raw.githubusercontent.com/fhdsl/OTTR_Quarto_Website/refs/heads/main/styles.css Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 624 [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/quarto_web/styles.css' 0K 100% 13.3M=0s 2025-03-31 17:14:49 (13.3 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/quarto_web/styles.css' saved [624/624] --2025-03-31 17:14:49-- https://raw.githubusercontent.com/fhdsl/OTTR_Quarto_Website/refs/heads/main/.github/workflows/render-site.yml Loaded CA certificate '/usr/ssl/certs/ca-bundle.crt' Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 2467 (2.4K) [text/plain] Saving to: 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/quarto_web/.github/workflows/render-site.yml' 0K .. 100% 7.45M=0s 2025-03-31 17:14:49 (7.45 MB/s) - 'D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/quarto_web/.github/workflows/render-site.yml' saved [2467/2467] pandoc to: html output-file: index.html standalone: true section-divs: true html-math-method: mathjax wrap: none default-image-extension: png metadata document-css: false link-citations: true date-format: long lang: en name: OTTR Quarto Website output_dir: docs navbar: left: href: index.html Output created: index.html Checking question: First question to as ... in quiz: NA Checking question: Example without choo ... in quiz: NA Checking question: Question example wit ... in quiz: NA Checking question: A more complicated e ... in quiz: NA Checking question: It would be a shame ... in quiz: NA Checking question: What a shame if we p ... in quiz: NA Checking question: Shame shame if we sa ... in quiz: NA Checking question: What if we don't put ... in quiz: NA Checking question: What if only give co ... in quiz: NA Checking quiz: D:/RCompile/CRANincoming/R-devel/lib/ottrpal/extdata/quizzes/quiz_bad.md Checking question: It would be a shame ... in quiz: quiz_bad.md Checking question: What a shame if we p ... in quiz: quiz_bad.md Checking question: Shame shame if we sa ... in quiz: quiz_bad.md Checking question: What if we don't put ... in quiz: quiz_bad.md Checking question: What if only give co ... in quiz: quiz_bad.md Checking quiz: D:/RCompile/CRANincoming/R-devel/lib/ottrpal/extdata/quizzes/quiz_good.md Checking question: First question to as ... in quiz: quiz_good.md Checking question: Example without choo ... in quiz: quiz_good.md Checking question: Question example wit ... in quiz: quiz_good.md Checking question: A more complicated e ... in quiz: quiz_good.md Question error report saved to:D:/RCompile/CRANincoming/R-devel/lib/ottrpal/extdata/quizzes/question_error_report.tsv trying URL 'https://github.com/jhudsl/OTTR_Template/archive/refs/heads/main.zip' downloaded 30.3 MB Checking quiz: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template-main/quizzes/quiz_ch1.md Checking question: First question to as ... in quiz: quiz_ch1.md Checking question: Question example wit ... in quiz: quiz_ch1.md Checking question: Second question to a ... in quiz: quiz_ch1.md Checking question: A more complicated e ... in quiz: quiz_ch1.md Checking question: A question in which ... in quiz: quiz_ch1.md No question errors to report! 1 Saved to: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template-main/check_reports/question_error_report.tsv Checking quiz: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template-main/quizzes/quiz_bad.md Checking question: It would be a shame ... in quiz: quiz_bad.md Checking question: What a shame if we p ... in quiz: quiz_bad.md Checking question: Shame shame if we sa ... in quiz: quiz_bad.md Checking question: What if we don't put ... in quiz: quiz_bad.md Checking question: What if only give co ... in quiz: quiz_bad.md Checking quiz: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template-main/quizzes/quiz_ch1.md Checking question: First question to as ... in quiz: quiz_ch1.md Checking question: Question example wit ... in quiz: quiz_ch1.md Checking question: Second question to a ... in quiz: quiz_ch1.md Checking question: A more complicated e ... in quiz: quiz_ch1.md Checking question: A question in which ... in quiz: quiz_ch1.md Question error report saved to:D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template-main/quizzes/question_error_report.tsv 1 Saved to: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template-main/check_reports/question_error_report.tsv trying URL 'https://github.com/jhudsl/OTTR_Template/archive/refs/heads/main.zip' Content type 'application/zip' length 31811169 bytes (30.3 MB) ================================================== downloaded 30.3 MB Rendering book in directory './OTTR_Template-main' processing file: index.Rmd output file: index.knit.md processing file: 01-intro.Rmd Error in loadNamespace(x) : there is no package called 'devtools' Calls: local ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Quitting from 01-intro.Rmd:17-19 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `loadNamespace()`: ! there is no package called 'devtools' --- Backtrace: ▆ 1. └─base::loadNamespace(x) 2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 3. └─base (local) withOneRestart(expr, restarts[[1L]]) 4. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Execution halted trying URL 'https://github.com/jhudsl/OTTR_Template_Website/archive/refs/heads/main.zip' downloaded 9.5 MB Rendering: ./OTTR_Template_Website-main/contact.Rmd "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS contact.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output contact.html --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\latex-div.lua" --variable bs3=TRUE --standalone --section-divs --template "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --include-before-body "D:\temp\2025_03_31_17_05_17_11381\RtmpUnkour\rmarkdown-str52ac7cf65e97.html" --variable navbar=1 --variable theme=cosmo --css styles.css --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_03_31_17_05_17_11381\RtmpUnkour\rmarkdown-str52ac7a083429.html" --include-in-header "resources\header.html" Rendering: ./OTTR_Template_Website-main/editing.Rmd "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS editing.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output editing.html --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\latex-div.lua" --variable bs3=TRUE --standalone --section-divs --template "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --include-before-body "D:\temp\2025_03_31_17_05_17_11381\RtmpUnkour\rmarkdown-str52ac5e97ad1.html" --variable navbar=1 --variable theme=cosmo --css styles.css --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_03_31_17_05_17_11381\RtmpUnkour\rmarkdown-str52ac6a424bfe.html" --include-in-header "resources\header.html" Rendering: ./OTTR_Template_Website-main/git_actions.Rmd "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS git_actions.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output git_actions.html --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\latex-div.lua" --variable bs3=TRUE --standalone --section-divs --template "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --include-before-body "D:\temp\2025_03_31_17_05_17_11381\RtmpUnkour\rmarkdown-str52ac6bc24e94.html" --variable navbar=1 --variable theme=cosmo --css styles.css --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_03_31_17_05_17_11381\RtmpUnkour\rmarkdown-str52ac2e705d53.html" --include-in-header "resources\header.html" Rendering: ./OTTR_Template_Website-main/hosting.Rmd "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS hosting.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output hosting.html --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\latex-div.lua" --variable bs3=TRUE --standalone --section-divs --template "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --include-before-body "D:\temp\2025_03_31_17_05_17_11381\RtmpUnkour\rmarkdown-str52ac70853876.html" --variable navbar=1 --variable theme=cosmo --css styles.css --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_03_31_17_05_17_11381\RtmpUnkour\rmarkdown-str52ac4d411c76.html" --include-in-header "resources\header.html" Rendering: ./OTTR_Template_Website-main/index.Rmd "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS index.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output index.html --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\latex-div.lua" --variable bs3=TRUE --standalone --section-divs --template "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --include-before-body "D:\temp\2025_03_31_17_05_17_11381\RtmpUnkour\rmarkdown-str52ac3a05155.html" --variable navbar=1 --variable theme=cosmo --css styles.css --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_03_31_17_05_17_11381\RtmpUnkour\rmarkdown-str52ac7d117e4a.html" --include-in-header "resources\header.html" Rendering: ./OTTR_Template_Website-main/setup.Rmd "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS setup.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output setup.html --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\latex-div.lua" --variable bs3=TRUE --standalone --section-divs --template "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --include-before-body "D:\temp\2025_03_31_17_05_17_11381\RtmpUnkour\rmarkdown-str52ac212f6213.html" --variable navbar=1 --variable theme=cosmo --css styles.css --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_03_31_17_05_17_11381\RtmpUnkour\rmarkdown-str52ac2f6023fe.html" --include-in-header "resources\header.html" Rendering: ./OTTR_Template_Website-main/style.Rmd "C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS style.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output style.html --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmarkdown\lua\latex-div.lua" --variable bs3=TRUE --standalone --section-divs --template "D:\RCompile\CRANpkg\lib\4.5\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --include-before-body "D:\temp\2025_03_31_17_05_17_11381\RtmpUnkour\rmarkdown-str52ac3e8f2d9b.html" --variable navbar=1 --variable theme=cosmo --css styles.css --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "D:\temp\2025_03_31_17_05_17_11381\RtmpUnkour\rmarkdown-str52ac16cc70ae.html" --include-in-header "resources\header.html" Output created: docs/index.html trying URL 'https://github.com/fhdsl/OTTR_Quarto/archive/refs/heads/main.zip' downloaded 3.4 MB [1/6] index.qmd [2/6] intro.qmd processing file: intro.qmd Error in loadNamespace(x) : there is no package called 'devtools' Calls: .main ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Quitting from intro.qmd:20-22 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `loadNamespace()`: ! there is no package called 'devtools' --- Backtrace: ▆ 1. └─base::loadNamespace(x) 2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 3. └─base (local) withOneRestart(expr, restarts[[1L]]) 4. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Execution halted trying URL 'https://github.com/fhdsl/OTTR_Quarto_Website/archive/refs/heads/main.zip' downloaded 9.4 MB [1/7] contact.qmd [2/7] editing.qmd processing file: editing.qmd output file: editing.knit.md [3/7] git_actions.qmd processing file: git_actions.qmd output file: git_actions.knit.md [4/7] hosting.qmd processing file: hosting.qmd output file: hosting.knit.md [5/7] index.qmd processing file: index.qmd output file: index.knit.md [6/7] setup.qmd processing file: setup.qmd output file: setup.knit.md [7/7] style.qmd processing file: style.qmd output file: style.knit.md Output created: docs\index.html trying URL 'https://github.com/jhudsl/OTTR_Template/archive/refs/heads/main.zip' Content type 'application/zip' length 31811169 bytes (30.3 MB) ================================================== downloaded 30.3 MB 1 Saved to: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template-main/check_reports/spell_check_results.tsv Rows: 1 Columns: 3 -- Column specification -------------------------------------------------------- Delimiter: "\t" chr (2): word, file dbl (1): lines i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. trying URL 'https://github.com/fhdsl/OTTR_Quarto/archive/refs/heads/main.zip' downloaded 3.4 MB 1 Saved to: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Quarto-main/check_reports/spell_check_results.tsv Rows: 1 Columns: 3 -- Column specification -------------------------------------------------------- Delimiter: "\t" chr (2): word, file dbl (1): lines i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. trying URL 'https://github.com/jhudsl/OTTR_Template_Website/archive/refs/heads/main.zip' downloaded 9.5 MB 1 Saved to: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Template_Website-main/check_reports/spell_check_results.tsv Rows: 1 Columns: 3 -- Column specification -------------------------------------------------------- Delimiter: "\t" chr (2): word, file dbl (1): lines i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. trying URL 'https://github.com/fhdsl/OTTR_Quarto_Website/archive/refs/heads/main.zip' downloaded 9.4 MB 1 Saved to: D:/RCompile/CRANincoming/R-devel/ottrpal.Rcheck/tests/testthat/OTTR_Quarto_Website-main/check_reports/spell_check_results.tsv Rows: 1 Columns: 3 -- Column specification -------------------------------------------------------- Delimiter: "\t" chr (2): word, file dbl (1): lines i Use `spec()` to retrieve the full column specification for this data. i Specify the column types or set `show_col_types = FALSE` to quiet this message. [ FAIL 2 | WARN 4 | SKIP 1 | PASS 41 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • empty test (1): 'test-main-check.R:1:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-rendering.R:5:3'): Rmd Rendering ─────────────────────────────── Error in `Rscript_render(f, render_args, render_meta, add1, add2)`: Failed to compile 01-intro.Rmd Backtrace: ▆ 1. └─ottrpal::setup_ottr_template(dir = ".", type = "rmd") at test-rendering.R:5:3 2. └─bookdown::render_book(output_dir) 3. └─bookdown:::render_new_session(...) 4. └─bookdown:::Rscript_render(...) ── Error ('test-rendering.R:26:3'): Quarto Rendering ─────────────────────────── Error in `quarto::quarto_render(output_dir, as_job = FALSE)`: x Error running quarto cli. Caused by error: ! System command 'quarto.exe' failed Backtrace: ▆ 1. └─ottrpal::setup_ottr_template(dir = ".", type = "quarto") at test-rendering.R:26:3 2. └─quarto::quarto_render(output_dir, as_job = FALSE) 3. └─quarto:::quarto_run(args, echo = TRUE, quarto_bin = quarto_bin) 4. └─base::tryCatch(...) 5. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 6. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 7. └─value[[3L]](cond) 8. └─cli::cli_abort(msg, call = .call, parent = e) 9. └─rlang::abort(...) [ FAIL 2 | WARN 4 | SKIP 1 | PASS 41 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... [19s] WARNING LaTeX errors when creating PDF version. This typically indicates Rd problems. LaTeX errors found: ! LaTeX Error: Unicode character 😱 (U+1F631) not set up for use with LaTeX. See the LaTeX manual or LaTeX Companion for explanation. Type H <return> for immediate help. * checking PDF version of manual without index ... ERROR * checking HTML version of manual ... OK * DONE Status: 2 ERRORs, 1 WARNING