R Under development (unstable) (2024-09-20 r87184 ucrt) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(otargen) > > test_check("otargen") [ FAIL 0 | WARN 0 | SKIP 25 | PASS 0 ] ══ Skipped tests (25) ══════════════════════════════════════════════════════════ • On CRAN (25): 'test-colocalisationsForGene.R:2:3', 'test-geneInfo.R:2:3', 'test-genesForVariant.R:2:3', 'test-getLociGenes.R:2:3', 'test-gwasColocalisation.R:2:3', 'test-gwasColocalisationForRegion.R:2:3', 'test-gwasCredibleSet.R:2:3', 'test-gwasRegional.R:2:3', 'test-indexVariantsAndStudiesForTagVariant.R:2:3', 'test-manhattan.R:2:3', 'test-overlapinfoForStudy.R:2:3', 'test-pheWAS.R:2:3', 'test-plot_coloc.R:2:3', 'test-plot_l2g.R:2:3', 'test-plot_manhattan.R:2:3', 'test-plot_phewas.R:2:3', 'test-qtlColocalisationVariantQuery.R:2:3', 'test-qtlCredibleSet.R:2:3', 'test-studiesAndLeadVariantsForGeneByL2G.R:2:3', 'test-studyInfo.R:2:3', 'test-studyLocus2GeneTable.R:2:3', 'test-studyVariants.R:2:3', 'test-tagVariantsAndStudiesForIndexVariant.R:2:3', 'test-topOverlappedStudies.R:2:3', 'test-variantInfo.R:2:3' [ FAIL 0 | WARN 0 | SKIP 25 | PASS 0 ] > > # to be removed when publishing the package > #sapply(stringr::str_replace(list.files("./R/"),".R$",""),usethis::use_test) > > proc.time() user system elapsed 1.54 0.28 1.81