R Under development (unstable) (2024-02-20 r85959 ucrt) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(otargen) > > test_check("otargen") \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [32ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [631ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [8ms] \ Downloading data for ENSG00000163946 ... v Downloading data for ENSG00000163946 ... [249ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [142ms] \ Downloading data for ENSG00000143001 ... v Downloading data for ENSG00000143001 ... [147ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [182ms] \ Downloading data for ENSG00000141510 ... v Downloading data for ENSG00000141510 ... [514ms] \ Downloading data for ENSG00000163946 ... | Downloading data for ENSG00000163946 ... v Downloading data for ENSG00000163946 ... [209ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [146ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [59ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [142ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data... v Downloading data... [57ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [58ms] \ Downloading data... v Downloading data... [54ms] \ Connecting to the Open Targets Genetics GrpahQL API... x Connecting to the Open Targets Genetics GrpahQL API... [53ms] \ Connecting to the Open Targets Genetics GraphQL API... v Connecting to the Open Targets Genetics GraphQL API... [7ms] \ Downloading data for 1_154453788_C_T ... v Downloading data for 1_154453788_C_T ... [174ms] \ Connecting to the Open Targets Genetics GraphQL API... v Connecting to the Open Targets Genetics GraphQL API... [61ms] \ Downloading data for rs55808324 ... v Downloading data for rs55808324 ... [127ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [6ms] \ Downloading data... v Downloading data... [67ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [6ms] \ Downloading data... x Downloading data... [54ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [6ms] \ Downloading data... v Downloading data... [89ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [6ms] \ Downloading the data... v Downloading the data... [49ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading the data... v Downloading the data... [53ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [6ms] \ Downloading data... v Downloading data... [56ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data... v Downloading data... [478ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data... v Downloading data... [176ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data... v Downloading data... [99ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [6ms] \ Downloading data for variant 1_55063514_G_A ... v Downloading data for variant 1_55063514_G_A ... [64ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [61ms] \ Downloading data for variant rs72698179 ... v Downloading data for variant rs72698179 ... [63ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [6ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [161ms] Selecting by Trait_reported_trimmed \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [6ms] \ Downloading data for ENSG00000167207 ... | Downloading data for ENSG00000167207 ... v Downloading data for ENSG00000167207 ... [132ms] \ Downloading data for ENSG00000096968 ... v Downloading data for ENSG00000096968 ... [256ms] \ Downloading data for ENSG00000138821 ... v Downloading data for ENSG00000138821 ... [141ms] \ Downloading data for ENSG00000125255 ... v Downloading data for ENSG00000125255 ... [118ms] Selecting by Trait_reported_trimmed \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [70ms] \ Downloading data for ENSG00000141510 ... v Downloading data for ENSG00000141510 ... [355ms] Selecting by Trait_reported_trimmed \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [167ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [128ms] \ Downloading data for ENSG00000163946 ... v Downloading data for ENSG00000163946 ... [194ms] \ Downloading data for ENSG00000141510 ... v Downloading data for ENSG00000141510 ... [369ms] Selecting by Trait_reported_trimmed \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data for ENSG00000167207 ... v Downloading data for ENSG00000167207 ... [4.8s] \ Downloading data for ENSG00000096968 ... v Downloading data for ENSG00000096968 ... [5.2s] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data for ENSG00000167207 ... v Downloading data for ENSG00000167207 ... [5s] \ Downloading data for ENSG00000096968 ... v Downloading data for ENSG00000096968 ... [4.9s] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data... v Downloading data... [364ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data for variant 14_87978408_G_A ... v Downloading data for variant 14_87978408_G_A ... [72ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [64ms] \ Downloading data for variant rs55808324 ... v Downloading data for variant rs55808324 ... [81ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data... v Downloading data... [104ms] \ Connecting the database... v Connecting the database... [7ms] \ Downloading data... v Downloading data... [61ms] \ Connecting the database... v Connecting the database... [155ms] \ Downloading data... v Downloading data... [77ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [6ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [4.8s] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [114ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [4.8s] \ Downloading data for ENSG00000163946 ... v Downloading data for ENSG00000163946 ... [4.7s] \ Connecting to the Open Targets Genetics GrpahQL API... x Connecting to the Open Targets Genetics GrpahQL API... [54ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data... v Downloading data... [50ms] \ Connecting to the Open Targets Genetics GraphQL API... v Connecting to the Open Targets Genetics GraphQL API... [12ms] \ Downloading data for GCST003044 , 14_88009660_C_T ... v Downloading data for GCST003044 , 14_88009660_C_T ... [573ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data... v Downloading data... [202ms] \ Connecting the database... v Connecting the database... [7ms] \ Downloading data... v Downloading data... [100ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [11ms] \ Downloading data... v Downloading data... [64ms] \ Connecting to the Open Targets Genetics GraphQL API... v Connecting to the Open Targets Genetics GraphQL API... [7ms] \ Downloading data... v Downloading data... [69ms] \ Connecting to the Open Targets Genetics GraphQL API... v Connecting to the Open Targets Genetics GraphQL API... [86ms] \ Downloading data... v Downloading data... [84ms] [ FAIL 0 | WARN 0 | SKIP 0 | PASS 83 ] > > # to be removed when publishing the package > #sapply(stringr::str_replace(list.files("./R/"),".R$",""),usethis::use_test) > > proc.time() user system elapsed 6.17 0.45 46.45