R Under development (unstable) (2024-02-08 r85876 ucrt) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(otargen) > > test_check("otargen") \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [29ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [606ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data for ENSG00000163946 ... v Downloading data for ENSG00000163946 ... [246ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [136ms] \ Downloading data for ENSG00000143001 ... v Downloading data for ENSG00000143001 ... [140ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [173ms] \ Downloading data for ENSG00000141510 ... v Downloading data for ENSG00000141510 ... [534ms] \ Downloading data for ENSG00000163946 ... | Downloading data for ENSG00000163946 ... v Downloading data for ENSG00000163946 ... [195ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [140ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [49ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [145ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data... v Downloading data... [53ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [48ms] \ Downloading data... v Downloading data... [46ms] \ Connecting to the Open Targets Genetics GrpahQL API... x Connecting to the Open Targets Genetics GrpahQL API... [45ms] \ Connecting to the Open Targets Genetics GraphQL API... v Connecting to the Open Targets Genetics GraphQL API... [7ms] \ Downloading data for 1_154453788_C_T ... v Downloading data for 1_154453788_C_T ... [165ms] \ Connecting to the Open Targets Genetics GraphQL API... v Connecting to the Open Targets Genetics GraphQL API... [59ms] \ Downloading data for rs55808324 ... v Downloading data for rs55808324 ... [118ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data... v Downloading data... [55ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data... x Downloading data... [44ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data... v Downloading data... [76ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading the data... v Downloading the data... [46ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading the data... v Downloading the data... [47ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data... v Downloading data... [49ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data... v Downloading data... [469ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data... v Downloading data... [169ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data... v Downloading data... [96ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data for variant 1_55063514_G_A ... v Downloading data for variant 1_55063514_G_A ... [64ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [53ms] \ Downloading data for variant rs72698179 ... v Downloading data for variant rs72698179 ... [56ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [6ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [139ms] Selecting by Trait_reported_trimmed \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [8ms] \ Downloading data for ENSG00000167207 ... v Downloading data for ENSG00000167207 ... [153ms] \ Downloading data for ENSG00000096968 ... | Downloading data for ENSG00000096968 ... v Downloading data for ENSG00000096968 ... [283ms] \ Downloading data for ENSG00000138821 ... v Downloading data for ENSG00000138821 ... [148ms] \ Downloading data for ENSG00000125255 ... v Downloading data for ENSG00000125255 ... [112ms] Selecting by Trait_reported_trimmed \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [53ms] \ Downloading data for ENSG00000141510 ... v Downloading data for ENSG00000141510 ... [351ms] Selecting by Trait_reported_trimmed \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [151ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [126ms] \ Downloading data for ENSG00000163946 ... v Downloading data for ENSG00000163946 ... [197ms] \ Downloading data for ENSG00000141510 ... v Downloading data for ENSG00000141510 ... [374ms] Selecting by Trait_reported_trimmed \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data for ENSG00000167207 ... v Downloading data for ENSG00000167207 ... [6.4s] \ Downloading data for ENSG00000096968 ... v Downloading data for ENSG00000096968 ... [5.8s] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [29ms] \ Downloading data for ENSG00000167207 ... x Downloading data for ENSG00000167207 ... [10.1s] Error in test plot_l2g: Bad Gateway (HTTP 502) \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [8ms] \ Downloading data... v Downloading data... [1.1s] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data for variant 14_87978408_G_A ... v Downloading data for variant 14_87978408_G_A ... [82ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [68ms] \ Downloading data for variant rs55808324 ... v Downloading data for variant rs55808324 ... [70ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data... v Downloading data... [105ms] \ Connecting the database... v Connecting the database... [7ms] \ Downloading data... v Downloading data... [75ms] \ Connecting the database... v Connecting the database... [119ms] \ Downloading data... v Downloading data... [84ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [5.4s] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [98ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [4.8s] \ Downloading data for ENSG00000163946 ... v Downloading data for ENSG00000163946 ... [5.4s] \ Connecting to the Open Targets Genetics GrpahQL API... x Connecting to the Open Targets Genetics GrpahQL API... [50ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data... v Downloading data... [206ms] \ Connecting to the Open Targets Genetics GraphQL API... v Connecting to the Open Targets Genetics GraphQL API... [7ms] \ Downloading data for GCST003044 , 14_88009660_C_T ... v Downloading data for GCST003044 , 14_88009660_C_T ... [671ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data... v Downloading data... [392ms] \ Connecting the database... v Connecting the database... [7ms] \ Downloading data... v Downloading data... [181ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data... v Downloading data... [74ms] \ Connecting to the Open Targets Genetics GraphQL API... v Connecting to the Open Targets Genetics GraphQL API... [7ms] \ Downloading data... v Downloading data... [69ms] \ Connecting to the Open Targets Genetics GraphQL API... v Connecting to the Open Targets Genetics GraphQL API... [64ms] \ Downloading data... v Downloading data... [135ms] [ FAIL 1 | WARN 0 | SKIP 0 | PASS 79 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-plot_l2g.R:23:5'): test plot_l2g works ─────────────────────── FALSE is not TRUE `actual`: FALSE `expected`: TRUE An error occurred in plotting. Backtrace: ▆ 1. └─base::tryCatch(...) at test-plot_l2g.R:3:3 2. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 3. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 4. └─value[[3L]](cond) 5. └─testthat::expect_true(FALSE, "An error occurred in plotting.") at test-plot_l2g.R:23:5 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 79 ] Error: Test failures Execution halted