* using log directory 'd:/RCompile/CRANincoming/R-devel/origamiPlot.Rcheck'
* using R Under development (unstable) (2024-06-11 r86723 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'origamiPlot/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'origamiPlot' version '0.1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'yiwenlu <yiwenlu@sas.upenn.edu>'

New submission

Possibly misspelled words in DESCRIPTION:
  origamiPlot (3:8)

The Title field starts with the package name.

The Description field should not start with the package name,
  'This package' or similar.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .Rd2pdf90613
  .Rd2pdf90632
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.

CRAN-pack does not know about
  .Rd2pdf90613
  .Rd2pdf90632
* checking for portable file names ... OK
* checking whether package 'origamiPlot' can be installed ... WARNING
Found the following significant warnings:
  Warning: object 'data' is created by more than one data call
See 'd:/RCompile/CRANincoming/R-devel/origamiPlot.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  'origami.Rproj'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Found the following directories with names of Rd2pdf directories:
  ./.Rd2pdf90613
  ./.Rd2pdf90632
Most likely, these were included erroneously.
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
origami_plot: no visible global function definition for 'rgb'
origami_plot: no visible global function definition for 'points'
origami_plot: no visible global function definition for 'segments'
origami_plot: no visible global function definition for 'arrows'
origami_plot: no visible global function definition for 'text'
origami_plot: no visible global function definition for 'polygon'
origami_plot_pairwise: no visible global function definition for
  'points'
origami_plot_pairwise: no visible global function definition for 'rgb'
origami_plot_pairwise: no visible global function definition for
  'segments'
origami_plot_pairwise: no visible global function definition for
  'arrows'
origami_plot_pairwise: no visible global function definition for 'text'
origami_plot_pairwise: no visible global function definition for
  'polygon'
origami_plot_weighted: no visible global function definition for 'rgb'
origami_plot_weighted: no visible global function definition for
  'points'
origami_plot_weighted: no visible global function definition for
  'segments'
origami_plot_weighted: no visible global function definition for
  'arrows'
origami_plot_weighted: no visible global function definition for 'text'
origami_plot_weighted: no visible global function definition for
  'polygon'
Undefined global functions or variables:
  arrows points polygon rgb segments text
Consider adding
  importFrom("grDevices", "rgb")
  importFrom("graphics", "arrows", "points", "polygon", "segments",
             "text")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'data'
Undocumented data sets:
  'data'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Undocumented arguments in Rd file 'data_preparation.Rd'
  '...'

Undocumented arguments in Rd file 'origami_plot.Rd'
  'full_point' 'point_col' 'point_pch' '...'

Undocumented arguments in Rd file 'origami_plot_pairwise.Rd'
  '...'

Undocumented arguments in Rd file 'origami_plot_weighted.Rd'
  '...'

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... [16s] OK
* checking HTML version of manual ... OK
* DONE
Status: 4 WARNINGs, 4 NOTEs