* using log directory ‘/home/hornik/tmp/CRAN_special_gcc-san/orbital.Rcheck’
* using R Under development (unstable) (2024-12-20 r87452)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (Debian 14.2.0-8) 14.2.0
    GNU Fortran (Debian 14.2.0-8) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘orbital/DESCRIPTION’ ... OK
* this is package ‘orbital’ version ‘0.3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: ‘rstanarm’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘orbital’ can be installed ... [5s/6s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [13s/13s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [15s/16s] OK
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
augment.orbital_class 6.75   0.33   7.188
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [116s/114s] ERROR
  Running ‘testthat.R’ [115s/113s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(orbital)
  > 
  > test_check("orbital")
  Loading required package: parsnip
  [ FAIL 4 | WARN 1 | SKIP 120 | PASS 317 ]
  
  ══ Skipped tests (120) ═════════════════════════════════════════════════════════
  • On CRAN (61): 'test-augment.R:41:2', 'test-dt.R:21:2', 'test-orbital.R:72:2',
    'test-orbital.R:98:2', 'test-orbital.R:121:2', 'test-orbital.R:140:2',
    'test-orbital.R:147:2', 'test-orbital.R:166:2', 'test-parsnip.R:17:2',
    'test-parsnip.R:57:2', 'test-parsnip.R:73:2', 'test-recipes.R:16:2',
    'test-sql.R:22:2', 'test-step_adasyn.R:31:2', 'test-step_adasyn.R:83:2',
    'test-step_adasyn.R:111:2', 'test-step_bin2factor.R:79:2',
    'test-step_boxcox.R:77:2', 'test-step_bsmote.R:31:2',
    'test-step_bsmote.R:83:2', 'test-step_center.R:77:2',
    'test-step_discretize.R:128:2', 'test-step_downsample.R:31:2',
    'test-step_downsample.R:83:2', 'test-step_dummy.R:108:2',
    'test-step_impute_mean.R:80:2', 'test-step_impute_median.R:81:2',
    'test-step_impute_mode.R:89:2', 'test-step_indicate_na.R:83:2',
    'test-step_intercept.R:67:2', 'test-step_inverse.R:94:2',
    'test-step_lag.R:63:2', 'test-step_lencode_glm.R:96:2',
    'test-step_lencode_mixed.R:96:2', 'test-step_log.R:94:2',
    'test-step_mutate.R:77:2', 'test-step_nearmiss.R:31:2',
    'test-step_nearmiss.R:83:2', 'test-step_normalize.R:77:2',
    'test-step_novel.R:99:2', 'test-step_other.R:101:2', 'test-step_pca.R:98:2',
    'test-step_pca_sparse.R:113:2', 'test-step_pca_truncated.R:111:2',
    'test-step_range.R:94:2', 'test-step_ratio.R:88:2',
    'test-step_rename.R:77:2', 'test-step_rose.R:31:2', 'test-step_rose.R:83:2',
    'test-step_scale.R:77:2', 'test-step_smote.R:31:2', 'test-step_smote.R:83:2',
    'test-step_smotenc.R:31:2', 'test-step_smotenc.R:83:2',
    'test-step_sqrt.R:77:2', 'test-step_tomek.R:31:2', 'test-step_tomek.R:83:2',
    'test-step_unknown.R:93:2', 'test-step_upsample.R:31:2',
    'test-step_upsample.R:83:2', 'test-workflows.R:16:2'
  • empty test (2): 'test-augment.R:31:1', 'test-augment.R:111:1'
  • is.na(testthat_spark_env_version()) is TRUE (36): 'test-step_adasyn.R:57:2',
    'test-step_bin2factor.R:56:2', 'test-step_boxcox.R:54:2',
    'test-step_bsmote.R:57:2', 'test-step_center.R:54:2',
    'test-step_discretize.R:102:2', 'test-step_downsample.R:57:2',
    'test-step_dummy.R:82:2', 'test-step_impute_mean.R:56:2',
    'test-step_impute_median.R:57:2', 'test-step_impute_mode.R:63:2',
    'test-step_indicate_na.R:59:2', 'test-step_intercept.R:44:2',
    'test-step_inverse.R:71:2', 'test-step_lencode_glm.R:69:2',
    'test-step_lencode_mixed.R:69:2', 'test-step_log.R:71:2',
    'test-step_mutate.R:54:2', 'test-step_nearmiss.R:57:2',
    'test-step_normalize.R:54:2', 'test-step_novel.R:71:2',
    'test-step_other.R:73:2', 'test-step_pca.R:74:2',
    'test-step_pca_sparse.R:86:2', 'test-step_pca_truncated.R:84:2',
    'test-step_range.R:71:2', 'test-step_ratio.R:62:2',
    'test-step_rename.R:54:2', 'test-step_rose.R:57:2', 'test-step_scale.R:54:2',
    'test-step_smote.R:57:2', 'test-step_smotenc.R:57:2',
    'test-step_sqrt.R:54:2', 'test-step_tomek.R:57:2',
    'test-step_unknown.R:67:2', 'test-step_upsample.R:57:2'
  • {VBsparsePCA} is not installed (8): 'test-step_pca_sparse_bayes.R:4:2',
    'test-step_pca_sparse_bayes.R:26:2', 'test-step_pca_sparse_bayes.R:47:2',
    'test-step_pca_sparse_bayes.R:68:2', 'test-step_pca_sparse_bayes.R:89:2',
    'test-step_pca_sparse_bayes.R:115:2', 'test-step_pca_sparse_bayes.R:145:2',
    'test-step_pca_sparse_bayes.R:174:2'
  • {rstanarm} is not installed (7): 'test-step_lencode_bayes.R:4:2',
    'test-step_lencode_bayes.R:27:2', 'test-step_lencode_bayes.R:49:2',
    'test-step_lencode_bayes.R:72:2', 'test-step_lencode_bayes.R:98:2',
    'test-step_lencode_bayes.R:128:2', 'test-step_lencode_bayes.R:157:2'
  • {xgboost} is not installed (6): 'test-model-xgboost.R:4:2',
    'test-model-xgboost.R:29:2', 'test-model-xgboost.R:52:2',
    'test-model-xgboost.R:84:2', 'test-model-xgboost.R:115:2',
    'test-model-xgboost.R:152:2'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-step_lencode_mixed.R:9:2'): step_lencode_mixed works ───────────
  <recipes_error_step/recipes_error/rlang_error/error/condition>
  Error in `step_lencode_mixed()`: Error in `step_lencode_mixed()`:
  Caused by error in `purrr::map()`:
  i In index: 1.
  i With name: gear.
  Caused by error in `.f()`:
  ! The package "lme4" is required.
  ── Error ('test-step_lencode_mixed.R:31:2'): step_lencode_mixed only calculates what is sufficient ──
  <recipes_error_step/recipes_error/rlang_error/error/condition>
  Error in `step_lencode_mixed()`: Error in `step_lencode_mixed()`:
  Caused by error in `purrr::map()`:
  i In index: 1.
  i With name: gear.
  Caused by error in `.f()`:
  ! The package "lme4" is required.
  ── Error ('test-step_lencode_mixed.R:130:2'): duckdb - step_lencode_mixed works ──
  <recipes_error_step/recipes_error/rlang_error/error/condition>
  Error in `step_lencode_mixed()`: Error in `step_lencode_mixed()`:
  Caused by error in `purrr::map()`:
  i In index: 1.
  i With name: gear.
  Caused by error in `.f()`:
  ! The package "lme4" is required.
  ── Error ('test-step_lencode_mixed.R:157:2'): arrow - step_lencode_mixed works ──
  <recipes_error_step/recipes_error/rlang_error/error/condition>
  Error in `step_lencode_mixed()`: Error in `step_lencode_mixed()`:
  Caused by error in `purrr::map()`:
  i In index: 1.
  i With name: gear.
  Caused by error in `.f()`:
  ! The package "lme4" is required.
  
  [ FAIL 4 | WARN 1 | SKIP 120 | PASS 317 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [4s/4s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR