* installing *source* package ‘optiSel’ ...
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 18.1.8 (1+b1)’
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c rcpp_completeness.cpp -o rcpp_completeness.o
In file included from rcpp_completeness.cpp:2:
In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c rcpp_genecont.cpp -o rcpp_genecont.o
In file included from rcpp_genecont.cpp:2:
In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c rcpp_haplofreq.cpp -o rcpp_haplofreq.o
In file included from rcpp_haplofreq.cpp:2:
In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c rcpp_makeA.cpp -o rcpp_makeA.o
In file included from rcpp_makeA.cpp:2:
In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c rcpp_makeA_lowMem.cpp -o rcpp_makeA_lowMem.o
In file included from rcpp_makeA_lowMem.cpp:2:
In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c rcpp_segBreedComp.cpp -o rcpp_segBreedComp.o
In file included from rcpp_segBreedComp.cpp:2:
In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c rcpp_segIBD.cpp -o rcpp_segIBD.o
In file included from rcpp_segIBD.cpp:2:
In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c rcpp_segIBDandN.cpp -o rcpp_segIBDandN.o
In file included from rcpp_segIBDandN.cpp:2:
In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c rcpp_segIBDandNVersion2.cpp -o rcpp_segIBDandNVersion2.o
In file included from rcpp_segIBDandNVersion2.cpp:2:
In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c rcpp_segInbreeding.cpp -o rcpp_segInbreeding.o
In file included from rcpp_segInbreeding.cpp:2:
In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c rcpp_segN.cpp -o rcpp_segN.o
In file included from rcpp_segN.cpp:2:
In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o optiSel.so RcppExports.o rcpp_completeness.o rcpp_genecont.o rcpp_haplofreq.o rcpp_makeA.o rcpp_makeA_lowMem.o rcpp_segBreedComp.o rcpp_segIBD.o rcpp_segIBDandN.o rcpp_segIBDandNVersion2.o rcpp_segInbreeding.o rcpp_segN.o -llapack -L/home/hornik/tmp/R/lib -lRblas -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R/lib -lR
installing to /srv/hornik/tmp/CRAN/optiSel.Rcheck/00LOCK-optiSel/00new/optiSel/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (optiSel)