downloading reverse dependencies ... downloading adobeanalyticsr_0.4.0.tar.gz ... ok downloading aphid_1.3.5.tar.gz ... ok downloading AzureAuth_1.3.3.tar.gz ... ok downloading AzureContainers_1.3.2.tar.gz ... ok downloading AzureCosmosR_1.0.0.tar.gz ... ok downloading AzureGraph_1.3.4.tar.gz ... ok downloading AzureKeyVault_1.0.5.tar.gz ... ok downloading AzureKusto_1.1.3.tar.gz ... ok downloading AzureQstor_1.0.1.tar.gz ... ok downloading AzureStor_3.7.0.tar.gz ... ok downloading AzureTableStor_1.0.0.tar.gz ... ok downloading AzureVMmetadata_1.0.1.tar.gz ... ok downloading base64_2.0.2.tar.gz ... ok downloading bcrypt_1.2.0.tar.gz ... ok downloading charlesschwabapi_1.0.4.tar.gz ... ok downloading cjar_0.1.2.tar.gz ... ok downloading contentid_0.0.18.tar.gz ... ok downloading cookiemonster_0.0.3.tar.gz ... ok downloading credentials_2.0.2.tar.gz ... ok downloading cryptotrackr_1.3.3.tar.gz ... ok downloading cyphr_1.1.4.tar.gz ... ok downloading D4TAlink.light_2.1.17.tar.gz ... ok downloading dclust_0.1.0.tar.gz ... ok downloading deident_1.0.0.tar.gz ... ok downloading distill_1.6.tar.gz ... ok downloading earthdatalogin_0.0.2.tar.gz ... ok downloading encryptr_0.1.3.tar.gz ... ok downloading epidatr_1.2.0.tar.gz ... ok downloading ExPanDaR_0.5.3.tar.gz ... ok downloading fanyi_0.0.7.tar.gz ... ok downloading firebase_1.0.2.tar.gz ... ok downloading gargle_1.5.2.tar.gz ... ok downloading geonapi_0.7-2.tar.gz ... ok downloading geonode4R_0.1-1.tar.gz ... ok downloading geosapi_0.7-1.tar.gz ... ok downloading gert_2.1.4.tar.gz ... ok downloading ghapps_1.1.1.tar.gz ... ok downloading googleCloudStorageR_0.7.0.tar.gz ... ok downloading GWalkR_0.2.0.tar.gz ... ok downloading httr_1.4.7.tar.gz ... ok downloading httr2_1.0.7.tar.gz ... ok downloading ids_1.0.1.tar.gz ... ok downloading insect_1.4.2.tar.gz ... ok downloading insee_1.1.7.tar.gz ... ok downloading jose_1.2.1.tar.gz ... ok downloading keyring_1.3.2.tar.gz ... ok downloading keyToEnglish_0.2.1.tar.gz ... ok downloading kmer_1.1.2.tar.gz ... ok downloading KoboconnectR_2.0.0.tar.gz ... ok downloading lazytrade_0.5.4.tar.gz ... ok downloading metricminer_0.5.1.tar.gz ... ok downloading mlflow_2.18.0.tar.gz ... ok downloading mongolite_2.8.2.tar.gz ... ok downloading mstrio_11.3.5.101.tar.gz ... ok downloading ocs4R_0.2-3.tar.gz ... ok downloading officer_0.6.7.tar.gz ... ok downloading opencpu_2.2.14.tar.gz ... ok downloading OPI_3.0.2.tar.gz ... ok downloading otp_0.1.1.tar.gz ... ok downloading ottrpal_1.2.1.tar.gz ... ok downloading ows4R_0.4.tar.gz ... ok downloading pkgdown_2.1.1.tar.gz ... ok downloading RBaseX_1.1.2.tar.gz ... ok downloading rbch_0.1-2.tar.gz ... ok downloading rbtc_0.1-7.tar.gz ... ok downloading rDataPipeline_0.60.0.tar.gz ... ok downloading reconstructr_2.0.4.tar.gz ... ok downloading rgoogleclassroom_0.9.1.tar.gz ... ok downloading ricu_0.5.6.tar.gz ... ok downloading RKEEL_1.3.4.tar.gz ... ok downloading RPresto_1.4.6.tar.gz ... ok downloading rsconnect_1.3.3.tar.gz ... ok downloading SCDB_0.4.1.tar.gz ... ok downloading sched_1.0.3.tar.gz ... ok downloading secret_1.1.0.tar.gz ... ok downloading SensusR_2.3.1.tar.gz ... ok downloading shinydbauth_1.0.0.1.tar.gz ... ok downloading shinymanager_1.0.410.tar.gz ... ok downloading sparklyr_1.8.6.tar.gz ... ok downloading sship_0.9.0.tar.gz ... ok downloading telegram.bot_3.0.0.tar.gz ... ok downloading umap_0.2.10.0.tar.gz ... ok downloading voson.tcn_0.5.0.tar.gz ... ok downloading wikkitidy_0.1.13.tar.gz ... ok downloading wilson_2.4.2.tar.gz ... ok downloading base64url_1.4.tar.gz ... ok downloading boxr_0.3.6.tar.gz ... ok downloading circle_0.7.3.tar.gz ... ok downloading databraryr_0.6.6.tar.gz ... ok downloading dataone_2.2.2.tar.gz ... ok downloading Microsoft365R_2.4.0.tar.gz ... ok downloading neonstore_0.5.1.tar.gz ... ok downloading OlinkAnalyze_4.0.2.tar.gz ... ok downloading pcutils_0.2.7.tar.gz ... ok downloading pins_1.4.0.tar.gz ... ok downloading rglobi_0.3.4.tar.gz ... ok downloading RTD_0.4.1.tar.gz ... ok downloading rtweet_2.0.0.tar.gz ... ok downloading solvebio_2.15.0.tar.gz ... ok downloading stevedore_0.9.6.tar.gz ... ok downloading yulab.utils_0.1.8.tar.gz ... ok installing dependencies ‘aphid’, ‘archive’, ‘aws.ec2metadata’, ‘AzureKeyVault’, ‘AzureStor’, ‘AzureTableStor’, ‘AzureVM’, ‘bcrypt’, ‘billboarder’, ‘blastula’, ‘carrier’, ‘configr’, ‘datapack’, ‘diffviewer’, ‘doconv’, ‘duckdbfs’, ‘eicu.demo’, ‘emayili’, ‘eulerr’, ‘feather’, ‘forestmodel’, ‘forge’, ‘FSA’, ‘fscache’, ‘gdalcubes’, ‘geometa’, ‘gghalves’, ‘ggVennDiagram’, ‘googleCloudStorageR’, ‘googleComputeEngineR’, ‘kmer’, ‘lemon’, ‘log4r’, ‘Microsoft365R’, ‘mimic.demo’, ‘MMWRweek’, ‘mockthat’, ‘multiwayvcov’, ‘nanoparquet’, ‘neonUtilities’, ‘officedown’, ‘openssl’, ‘options’, ‘ottrpal’, ‘paws.storage’, ‘phylogram’, ‘pmml’, ‘prt’, ‘r.proxy’, ‘rcorpora’, ‘RcppMsgPack’, ‘redux’, ‘ReinforcementLearning’, ‘relaimpo’, ‘RestRserve’, ‘revtools’, ‘RKEELdata’, ‘scrypt’, ‘SSEparser’, ‘storr’, ‘thor’, ‘unix’, ‘voronoiTreemap’, ‘XLConnect’ Warning: packages ‘mimic.demo’, ‘eicu.demo’ are not available for this version of R Versions of these packages for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘Rserve’, ‘locatexec’, ‘polylabelr’, ‘ngram’ begin installing package ‘Rserve’ begin installing package ‘locatexec’ begin installing package ‘polylabelr’ begin installing package ‘ngram’ begin installing package ‘openssl’ begin installing package ‘feather’ begin installing package ‘XLConnect’ begin installing package ‘phylogram’ begin installing package ‘lemon’ begin installing package ‘gdalcubes’ begin installing package ‘MMWRweek’ begin installing package ‘multiwayvcov’ begin installing package ‘SSEparser’ begin installing package ‘rcorpora’ begin installing package ‘aws.ec2metadata’ begin installing package ‘ReinforcementLearning’ begin installing package ‘forge’ begin installing package ‘carrier’ begin installing package ‘unix’ begin installing package ‘diffviewer’ begin installing package ‘configr’ begin installing package ‘prt’ begin installing package ‘mockthat’ begin installing package ‘forestmodel’ begin installing package ‘RKEELdata’ begin installing package ‘fscache’ begin installing package ‘pmml’ begin installing package ‘billboarder’ * installing *source* package ‘MMWRweek’ ... ** package ‘MMWRweek’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MMWRweek) begin installing package ‘scrypt’ * installing *source* package ‘mockthat’ ... ** package ‘mockthat’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mockthat) begin installing package ‘log4r’ * installing *source* package ‘diffviewer’ ... ** package ‘diffviewer’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (diffviewer) begin installing package ‘options’ * installing *source* package ‘carrier’ ... ** package ‘carrier’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (carrier) begin installing package ‘datapack’ * installing *source* package ‘multiwayvcov’ ... ** package ‘multiwayvcov’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (multiwayvcov) begin installing package ‘duckdbfs’ * installing *source* package ‘locatexec’ ... ** package ‘locatexec’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (locatexec) begin installing package ‘storr’ * installing *source* package ‘RKEELdata’ ... ** package ‘RKEELdata’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RKEELdata) begin installing package ‘FSA’ * installing *source* package ‘forge’ ... ** package ‘forge’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (forge) begin installing package ‘gghalves’ * installing *source* package ‘aws.ec2metadata’ ... ** package ‘aws.ec2metadata’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (aws.ec2metadata) begin installing package ‘relaimpo’ * installing *source* package ‘phylogram’ ... ** package ‘phylogram’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (phylogram) begin installing package ‘voronoiTreemap’ * installing *source* package ‘unix’ ... ** package ‘unix’ successfully unpacked and MD5 sums checked ** using staged installation Checking for AppArmor... (Linux) Found pkg-config cflags/libs! Using PKG_CFLAGS= Using PKG_LIBS=-lapparmor ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpLbdVtF/R.INSTALL2a059019d800ce/unix/src' rm -f unix.so chroot.o fork.o process.o register.o rlimit.o userinfo.o util.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DHAVE_APPARMOR -DSYS_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chroot.c -o chroot.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DHAVE_APPARMOR -DSYS_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fork.c -o fork.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DHAVE_APPARMOR -DSYS_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c process.c -o process.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DHAVE_APPARMOR -DSYS_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c register.c -o register.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DHAVE_APPARMOR -DSYS_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rlimit.c -o rlimit.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DHAVE_APPARMOR -DSYS_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c userinfo.c -o userinfo.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DHAVE_APPARMOR -DSYS_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c util.c -o util.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o unix.so chroot.o fork.o process.o register.o rlimit.o userinfo.o util.o -lapparmor -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpLbdVtF/R.INSTALL2a059019d800ce/unix/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-unix/00new/unix/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (unix) begin installing package ‘ggVennDiagram’ * installing *source* package ‘SSEparser’ ... ** package ‘SSEparser’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SSEparser) begin installing package ‘archive’ * installing *source* package ‘configr’ ... ** package ‘configr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (configr) begin installing package ‘nanoparquet’ * installing *source* package ‘fscache’ ... ** package ‘fscache’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fscache) begin installing package ‘RcppMsgPack’ * installing *source* package ‘options’ ... ** package ‘options’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (options) begin installing package ‘doconv’ * installing *source* package ‘log4r’ ... ** package ‘log4r’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpNdO2yo/R.INSTALL2a0e127117d39/log4r/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c log4r.c -o log4r.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c logfmt.c -o logfmt.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o log4r.so log4r.o logfmt.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpNdO2yo/R.INSTALL2a0e127117d39/log4r/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-log4r/00new/log4r/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (log4r) * installing *source* package ‘duckdbfs’ ... ** package ‘duckdbfs’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (duckdbfs) * installing *source* package ‘prt’ ... ** package ‘prt’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (prt) * installing *source* package ‘rcorpora’ ... ** package ‘rcorpora’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rcorpora) * installing *source* package ‘ngram’ ... ** package ‘ngram’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpa5LTnh/R.INSTALL2a05431a016426/ngram/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c asweka.c -o asweka.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c babble.c -o babble.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c constructor.c -o constructor.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c converters.c -o converters.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c count.c -o count.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c getseed.c -o getseed.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram_native.c -o ngram_native.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phrase_table.c -o phrase_table.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c print.c -o print.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/counts.c -o ngram/src/counts.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/gen.c -o ngram/src/gen.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/hash.c -o ngram/src/hash.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/lex.c -o ngram/src/lex.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/process.c -o ngram/src/process.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/wordcmp.c -o ngram/src/wordcmp.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/rand/mt/rand_mt.c -o ngram/src/rand/mt/rand_mt.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/rand/mrg/rand_mrg.c -o ngram/src/rand/mrg/rand_mrg.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/rand/rng_interface.c -o ngram/src/rand/rng_interface.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/rand/samplers.c -o ngram/src/rand/samplers.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o ngram.so asweka.o babble.o constructor.o converters.o count.o getseed.o ngram_native.o phrase_table.o print.o ngram/src/counts.o ngram/src/gen.o ngram/src/hash.o ngram/src/lex.o ngram/src/process.o ngram/src/wordcmp.o ngram/src/rand/mt/rand_mt.o ngram/src/rand/mrg/rand_mrg.o ngram/src/rand/rng_interface.o ngram/src/rand/samplers.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpa5LTnh/R.INSTALL2a05431a016426/ngram/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ngram/00new/ngram/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ngram) * installing *source* package ‘forestmodel’ ... ** package ‘forestmodel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (forestmodel) * installing *source* package ‘doconv’ ... ** package ‘doconv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (doconv) * installing *source* package ‘ReinforcementLearning’ ... ** package ‘ReinforcementLearning’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ReinforcementLearning) * installing *source* package ‘voronoiTreemap’ ... ** package ‘voronoiTreemap’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (voronoiTreemap) * installing *source* package ‘billboarder’ ... ** package ‘billboarder’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (billboarder) * installing *source* package ‘gghalves’ ... ** package ‘gghalves’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gghalves) * installing *source* package ‘datapack’ ... ** package ‘datapack’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (datapack) * installing *source* package ‘lemon’ ... ** package ‘lemon’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lemon) * installing *source* package ‘storr’ ... ** package ‘storr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpinZWzc/R.INSTALL2a107d2de9e565/storr/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c storr.c -o storr.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o storr.so storr.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpinZWzc/R.INSTALL2a107d2de9e565/storr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-storr/00new/storr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (storr) begin installing package ‘thor’ begin installing package ‘redux’ * installing *source* package ‘openssl’ ... ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS= Using PKG_LIBS=-l:libssl.so.3 -l:libcrypto.so.3 ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBiD8A7/R.INSTALL2a0553582e3473/openssl/src' rm -f aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o openssl.so bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c aes.c -o aes.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c base64.c -o base64.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bignum.c -o bignum.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cert.c -o cert.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c compatibility.c -o compatibility.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c diffie.c -o diffie.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c envelope.c -o envelope.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c error.c -o error.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hash.c -o hash.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c info.c -o info.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c keygen.c -o keygen.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c keys.c -o keys.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c onload.c -o onload.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c openssh.c -o openssh.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c password.c -o password.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pbkdf.c -o pbkdf.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pem.c -o pem.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pkcs12.c -o pkcs12.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pkcs7.c -o pkcs7.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rand.c -o rand.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rsa.c -o rsa.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c signing.c -o signing.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ssl.c -o ssl.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c stream.c -o stream.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c write.c -o write.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c x25519.c -o x25519.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bcrypt/bcrypt_pbkdf.c -o bcrypt/bcrypt_pbkdf.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DOPENSSL_SUPPRESS_DEPRECATED -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bcrypt/blowfish.c -o bcrypt/blowfish.o ar rcs bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o openssl.so aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o -Lbcrypt -lstatbcrypt -l:libssl.so.3 -l:libcrypto.so.3 -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBiD8A7/R.INSTALL2a0553582e3473/openssl/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-openssl/00new/openssl/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (openssl) begin installing package ‘AzureVM’ begin installing package ‘officedown’ begin installing package ‘geometa’ begin installing package ‘googleComputeEngineR’ begin installing package ‘blastula’ begin installing package ‘emayili’ begin installing package ‘neonUtilities’ begin installing package ‘r.proxy’ begin installing package ‘Microsoft365R’ begin installing package ‘paws.storage’ begin installing package ‘kmer’ begin installing package ‘bcrypt’ begin installing package ‘AzureKeyVault’ * installing *source* package ‘polylabelr’ ... ** package ‘polylabelr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7d5nEG/R.INSTALL2a054f202d0431/polylabelr/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c poi.cpp -o poi.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o polylabelr.so RcppExports.o poi.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7d5nEG/R.INSTALL2a054f202d0431/polylabelr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-polylabelr/00new/polylabelr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (polylabelr) begin installing package ‘AzureStor’ * installing *source* package ‘ggVennDiagram’ ... ** package ‘ggVennDiagram’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggVennDiagram) begin installing package ‘ottrpal’ * installing *source* package ‘r.proxy’ ... ** package ‘r.proxy’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (r.proxy) begin installing package ‘eulerr’ * installing *source* package ‘XLConnect’ ... ** package ‘XLConnect’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location trying URL 'https://repo1.maven.org/maven2/org/apache/poi/poi-ooxml-full/5.3.0/poi-ooxml-full-5.3.0.jar' Content type 'application/java-archive' length 13947616 bytes (13.3 MB) ================================================== downloaded 13.3 MB trying URL 'https://repo1.maven.org/maven2/org/apache/poi/poi-ooxml/5.3.0/poi-ooxml-5.3.0.jar' Content type 'application/java-archive' length 2031513 bytes (1.9 MB) ================================================== downloaded 1.9 MB trying URL 'https://repo1.maven.org/maven2/org/apache/poi/poi/5.3.0/poi-5.3.0.jar' Content type 'application/java-archive' length 2979181 bytes (2.8 MB) ================================================== downloaded 2.8 MB trying URL 'https://repo1.maven.org/maven2/org/apache/commons/commons-compress/1.26.2/commons-compress-1.26.2.jar' Content type 'application/java-archive' length 1083634 bytes (1.0 MB) ================================================== downloaded 1.0 MB trying URL 'https://repo1.maven.org/maven2/org/apache/commons/commons-lang3/3.14.0/commons-lang3-3.14.0.jar' Content type 'application/java-archive' length 657952 bytes (642 KB) ================================================== downloaded 642 KB trying URL 'https://repo1.maven.org/maven2/org/apache/xmlbeans/xmlbeans/5.2.1/xmlbeans-5.2.1.jar' Content type 'application/java-archive' length 2202876 bytes (2.1 MB) ================================================== downloaded 2.1 MB trying URL 'https://repo1.maven.org/maven2/org/apache/commons/commons-collections4/4.4/commons-collections4-4.4.jar' Content type 'application/java-archive' length 751914 bytes (734 KB) ================================================== downloaded 734 KB trying URL 'https://repo1.maven.org/maven2/org/apache/commons/commons-math3/3.6.1/commons-math3-3.6.1.jar' Content type 'application/java-archive' length 2213560 bytes (2.1 MB) ================================================== downloaded 2.1 MB trying URL 'https://repo1.maven.org/maven2/org/apache/logging/log4j/log4j-api/2.23.1/log4j-api-2.23.1.jar' Content type 'application/java-archive' length 342535 bytes (334 KB) ================================================== downloaded 334 KB trying URL 'https://repo1.maven.org/maven2/commons-codec/commons-codec/1.17.0/commons-codec-1.17.0.jar' Content type 'application/java-archive' length 372608 bytes (363 KB) ================================================== downloaded 363 KB trying URL 'https://repo1.maven.org/maven2/commons-io/commons-io/2.16.1/commons-io-2.16.1.jar' Content type 'application/java-archive' length 508826 bytes (496 KB) ================================================== downloaded 496 KB trying URL 'https://repo1.maven.org/maven2/com/zaxxer/SparseBitSet/1.3/SparseBitSet-1.3.jar' Content type 'application/java-archive' length 25843 bytes (25 KB) ================================================== downloaded 25 KB ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (XLConnect) begin installing package ‘revtools’ * installing *source* package ‘pmml’ ... ** package ‘pmml’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pmml) begin installing package ‘googleCloudStorageR’ * installing *source* package ‘bcrypt’ ... ** package ‘bcrypt’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8J6uE0/R.INSTALL2a1cfc1a7caea0/bcrypt/src' rm -f bcrypt.so bcrypt_r.o register.o bcrypt/libstatbcrypt.a bcrypt/bcrypt.o bcrypt/blowfish.o bcrypt/bcrypt_pbkdf.o bcrypt/sha2.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ibcrypt -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bcrypt_r.c -o bcrypt_r.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ibcrypt -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c register.c -o register.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ibcrypt -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bcrypt/bcrypt.c -o bcrypt/bcrypt.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ibcrypt -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bcrypt/blowfish.c -o bcrypt/blowfish.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ibcrypt -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bcrypt/bcrypt_pbkdf.c -o bcrypt/bcrypt_pbkdf.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ibcrypt -DSTRICT_R_HEADERS -DR_NO_REMAP -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bcrypt/sha2.c -o bcrypt/sha2.o ar rcs bcrypt/libstatbcrypt.a bcrypt/bcrypt.o bcrypt/blowfish.o bcrypt/bcrypt_pbkdf.o bcrypt/sha2.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o bcrypt.so bcrypt_r.o register.o -Lbcrypt -lstatbcrypt -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8J6uE0/R.INSTALL2a1cfc1a7caea0/bcrypt/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-bcrypt/00new/bcrypt/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bcrypt) * installing *source* package ‘FSA’ ... ** package ‘FSA’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FSA) * installing *source* package ‘officedown’ ... ** package ‘officedown’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (officedown) * installing *source* package ‘blastula’ ... ** package ‘blastula’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (blastula) * installing *source* package ‘AzureStor’ ... ** package ‘AzureStor’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AzureStor) begin installing package ‘AzureTableStor’ * installing *source* package ‘AzureVM’ ... ** package ‘AzureVM’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AzureVM) * installing *source* package ‘ottrpal’ ... ** package ‘ottrpal’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ottrpal) * installing *source* package ‘scrypt’ ... ** package ‘scrypt’ successfully unpacked and MD5 sums checked ** using staged installation + : /home/hornik/tmp/R-d-gcc-14 + test -z /home/hornik/tmp/R-d-gcc-14 + /home/hornik/tmp/R-d-gcc-14/bin/R CMD config CC + CC=gcc-14 + /home/hornik/tmp/R-d-gcc-14/bin/R CMD config CFLAGS + CFLAGS=-g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native + /home/hornik/tmp/R-d-gcc-14/bin/R CMD config CPPFLAGS + CPPFLAGS=-I/usr/local/include + export CC + export CFLAGS + export CPPFLAGS + cd src/scrypt-1.1.6/ + chmod +x ./configure + cd src/scrypt-1.1.6/ + ./configure checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking for gcc... gcc-14 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-14 accepts -g... yes checking for gcc-14 option to enable C11 features... none needed checking whether gcc-14 understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc-14... gcc3 checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for err.h... yes checking for sys/endian.h... no checking for sys/sysinfo.h... yes checking for clock_gettime in -lrt... yes checking for clock_gettime... yes checking for sysinfo... yes checking for posix_memalign... yes checking for struct sysinfo... yes checking for struct sysinfo.mem_unit... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating config.h config.status: executing depfiles commands ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpW3VSJA/R.INSTALL2a0cd5396dd740/scrypt/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./scrypt-1.1.6/ -I./scrypt-1.1.6/lib -I./scrypt-1.1.6/lib/util -DHAVE_CONFIG_H -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c scrypt-1.1.6/lib/crypto/sha256.c -o scrypt-1.1.6/lib/crypto/sha256.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./scrypt-1.1.6/ -I./scrypt-1.1.6/lib -I./scrypt-1.1.6/lib/util -DHAVE_CONFIG_H -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c scrypt-1.1.6/lib/crypto/crypto_scrypt-ref.c -o scrypt-1.1.6/lib/crypto/crypto_scrypt-ref.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./scrypt-1.1.6/ -I./scrypt-1.1.6/lib -I./scrypt-1.1.6/lib/util -DHAVE_CONFIG_H -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./scrypt-1.1.6/ -I./scrypt-1.1.6/lib -I./scrypt-1.1.6/lib/util -DHAVE_CONFIG_H -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c scrypt.cpp -o scrypt.o scrypt.cpp: In function ‘bool verifyPassword(const std::string&, const std::string&)’: scrypt.cpp:197:9: warning: unused variable ‘logN’ [-Wunused-variable] 197 | int logN=0; | ^~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./scrypt-1.1.6/ -I./scrypt-1.1.6/lib -I./scrypt-1.1.6/lib/util -DHAVE_CONFIG_H -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c base64.cpp -o base64.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./scrypt-1.1.6/ -I./scrypt-1.1.6/lib -I./scrypt-1.1.6/lib/util -DHAVE_CONFIG_H -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c util.cpp -o util.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o scrypt.so scrypt-1.1.6/lib/crypto/sha256.o scrypt-1.1.6/lib/crypto/crypto_scrypt-ref.o RcppExports.o scrypt.o base64.o util.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpW3VSJA/R.INSTALL2a0cd5396dd740/scrypt/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-scrypt/00new/scrypt/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scrypt) * installing *source* package ‘redux’ ... ** package ‘redux’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/hiredis -D_FILE_OFFSET_BITS=64 -I/usr/include/hiredis Using PKG_LIBS=-lhiredis ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdkYs5l/R.INSTALL2a1c7229ca384a/redux/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include/hiredis -D_FILE_OFFSET_BITS=64 -I/usr/include/hiredis -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c connection.c -o connection.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include/hiredis -D_FILE_OFFSET_BITS=64 -I/usr/include/hiredis -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c conversions.c -o conversions.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include/hiredis -D_FILE_OFFSET_BITS=64 -I/usr/include/hiredis -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registration.c -o registration.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include/hiredis -D_FILE_OFFSET_BITS=64 -I/usr/include/hiredis -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c subscribe.c -o subscribe.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o redux.so connection.o conversions.o registration.o subscribe.o -lhiredis -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdkYs5l/R.INSTALL2a1c7229ca384a/redux/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-redux/00new/redux/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (redux) * installing *source* package ‘relaimpo’ ... ** package ‘relaimpo’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (relaimpo) * installing *source* package ‘googleComputeEngineR’ ... ** package ‘googleComputeEngineR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (googleComputeEngineR) * installing *source* package ‘neonUtilities’ ... ** package ‘neonUtilities’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (neonUtilities) * installing *source* package ‘googleCloudStorageR’ ... ** package ‘googleCloudStorageR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (googleCloudStorageR) * installing *source* package ‘AzureTableStor’ ... ** package ‘AzureTableStor’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AzureTableStor) * installing *source* package ‘emayili’ ... ** package ‘emayili’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (emayili) * installing *source* package ‘thor’ ... ** package ‘thor’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpB52nm5/R.INSTALL2a1c707fd47e3c/thor/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ilmdb -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lmdb/mdb.c -o lmdb/mdb.o lmdb/mdb.c: In function ‘mdb_page_dirty’: lmdb/mdb.c:2383:13: warning: variable ‘rc’ set but not used [-Wunused-but-set-variable] 2383 | int rc, (*insert)(MDB_ID2L, MDB_ID2 *); | ^~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ilmdb -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lmdb/midl.c -o lmdb/midl.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ilmdb -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registration.c -o registration.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ilmdb -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c thor.c -o thor.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Ilmdb -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c util.c -o util.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o thor.so lmdb/mdb.o lmdb/midl.o registration.o thor.o util.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpB52nm5/R.INSTALL2a1c707fd47e3c/thor/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-thor/00new/thor/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (thor) * installing *source* package ‘AzureKeyVault’ ... ** package ‘AzureKeyVault’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AzureKeyVault) * installing *source* package ‘revtools’ ... ** package ‘revtools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (revtools) * installing *source* package ‘kmer’ ... ** package ‘kmer’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpIoxqAG/R.INSTALL2a1cff2341c9e/kmer/src' g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c distance.cpp -o distance.o distance.cpp: In function ‘Rcpp::NumericMatrix kcountDNA(Rcpp::List, int)’: distance.cpp:10:6: warning: unnecessary parentheses in declaration of ‘fourtopowerk’ [-Wparentheses] 10 | int(fourtopowerk) = 1; | ^~~~~~~~~~~~~~ distance.cpp:10:6: note: remove parentheses 10 | int(fourtopowerk) = 1; | ^~~~~~~~~~~~~~ | - - g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o kmer.so RcppExports.o distance.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpIoxqAG/R.INSTALL2a1cff2341c9e/kmer/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-kmer/00new/kmer/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kmer) begin installing package ‘aphid’ * installing *source* package ‘archive’ ... ** package ‘archive’ successfully unpacked and MD5 sums checked ** using staged installation ** Running ./configure Found pkg-config cflags and libs! PKG_CONFIG_PATH= PKG_CFLAGS= PKG_LIBS=-larchive ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpG9DTn7/R.INSTALL2a14e52baf703b/archive/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Icpp11/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c archive.cpp -o archive.o In file included from cpp11/include/cpp11.hpp:3, from r_archive.h:1, from archive.cpp:1: cpp11/include/cpp11/R.hpp:11:9: warning: "R_NO_REMAP" redefined 11 | #define R_NO_REMAP | ^~~~~~~~~~ : note: this is the location of the previous definition g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Icpp11/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c archive_extract.cpp -o archive_extract.o In file included from cpp11/include/cpp11.hpp:3, from r_archive.h:1, from archive_extract.cpp:1: cpp11/include/cpp11/R.hpp:11:9: warning: "R_NO_REMAP" redefined 11 | #define R_NO_REMAP | ^~~~~~~~~~ : note: this is the location of the previous definition g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Icpp11/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c archive_read.cpp -o archive_read.o In file included from cpp11/include/cpp11.hpp:3, from r_archive.h:1, from archive_read.cpp:1: cpp11/include/cpp11/R.hpp:11:9: warning: "R_NO_REMAP" redefined 11 | #define R_NO_REMAP | ^~~~~~~~~~ : note: this is the location of the previous definition g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Icpp11/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c archive_write.cpp -o archive_write.o In file included from cpp11/include/cpp11.hpp:3, from r_archive.h:1, from archive_write.cpp:1: cpp11/include/cpp11/R.hpp:11:9: warning: "R_NO_REMAP" redefined 11 | #define R_NO_REMAP | ^~~~~~~~~~ : note: this is the location of the previous definition g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Icpp11/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c archive_write_direct.cpp -o archive_write_direct.o In file included from cpp11/include/cpp11.hpp:3, from r_archive.h:1, from archive_write_direct.cpp:1: cpp11/include/cpp11/R.hpp:11:9: warning: "R_NO_REMAP" redefined 11 | #define R_NO_REMAP | ^~~~~~~~~~ : note: this is the location of the previous definition g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Icpp11/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c archive_write_files.cpp -o archive_write_files.o In file included from cpp11/include/cpp11.hpp:3, from r_archive.h:1, from archive_write_files.cpp:1: cpp11/include/cpp11/R.hpp:11:9: warning: "R_NO_REMAP" redefined 11 | #define R_NO_REMAP | ^~~~~~~~~~ : note: this is the location of the previous definition g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Icpp11/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c cpp11.cpp -o cpp11.o In file included from cpp11/include/cpp11.hpp:3, from cpp11/include/cpp11/declarations.hpp:13, from cpp11.cpp:5: cpp11/include/cpp11/R.hpp:11:9: warning: "R_NO_REMAP" redefined 11 | #define R_NO_REMAP | ^~~~~~~~~~ : note: this is the location of the previous definition g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Icpp11/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c r_archive.cpp -o r_archive.o In file included from cpp11/include/cpp11.hpp:3, from r_archive.h:1, from r_archive.cpp:1: cpp11/include/cpp11/R.hpp:11:9: warning: "R_NO_REMAP" redefined 11 | #define R_NO_REMAP | ^~~~~~~~~~ : note: this is the location of the previous definition gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Icpp11/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cli/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c connection/connection.c -o connection/connection.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o archive.so archive.o archive_extract.o archive_read.o archive_write.o archive_write_direct.o archive_write_files.o cpp11.o r_archive.o -larchive -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpG9DTn7/R.INSTALL2a14e52baf703b/archive/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-archive/00new/archive/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (archive) * installing *source* package ‘Microsoft365R’ ... ** package ‘Microsoft365R’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Microsoft365R) * installing *source* package ‘Rserve’ ... ** package ‘Rserve’ successfully unpacked and MD5 sums checked ** using staged installation checking whether to compile the server... yes checking whether to compile the client... no checking for gcc... gcc-14 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-14 accepts -g... yes checking for gcc-14 option to enable C11 features... none needed checking for sys/wait.h that is POSIX.1 compatible... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for vfork.h... no checking for limits.h... yes checking for string.h... (cached) yes checking for memory.h... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for sys/socket.h... yes checking for sys/un.h... yes checking for netinet/in.h... yes checking for netinet/tcp.h... yes checking for an ANSI C-conforming const... yes checking whether byte ordering is bigendian... no checking size of size_t... 8 checking for pid_t... yes checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking return type of signal handlers... void checking for memset... yes checking for mkdir... yes checking for rmdir... yes checking for select... yes checking for socket... yes checking for srandomdev... no checking for library containing crypt... -lcrypt checking for crypt.h... yes checking for socklen_t... yes checking for connect... yes checking whether to enable IPv6... no checking for dlopen in -ldl... yes checking for openssl/rsa.h... yes checking for library containing RSA_generate_key... -lcrypto checking for openssl/ssl.h... yes checking for library containing SSL_CTX_load_verify_locations... -lssl checking whether threads are desired... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking if compiler needs -Werror to reject unknown flags... no checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking for working threads support... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/client/cxx/Makefile config.status: creating src/config.h ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5yTnKT/R.INSTALL2a054c33057730/Rserve/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RSserver.c -o RSserver.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Rserv.c -o Rserv.o Rserv.c: In function ‘auth_user’: Rserv.c:2439:21: warning: variable ‘ctrl_flag’ set but not used [-Wunused-but-set-variable] 2439 | int ctrl_flag = 0, u_uid = 0, u_gid = 0; | ^~~~~~~~~ Rserv.c: In function ‘Rserve_fork_compute’: Rserv.c:3304:25: warning: variable ‘cmd’ set but not used [-Wunused-but-set-variable] 3304 | int rn, cmd; | ^~~ Rserv.c: In function ‘OCAP_iteration’: Rserv.c:3460:29: warning: variable ‘cmd’ set but not used [-Wunused-but-set-variable] 3460 | int cmd; | ^~~ Rserv.c: In function ‘Rserve_QAP1_connected’: Rserv.c:3907:9: warning: variable ‘unaligned’ set but not used [-Wunused-but-set-variable] 3907 | int unaligned=0; | ^~~~~~~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c base64.c -o base64.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c date.c -o date.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c http.c -o http.o In file included from http.c:10: bsdcmpt.h:17:20: warning: ‘strnstr’ defined but not used [-Wunused-function] 17 | static const char *strnstr(const char *haystack, const char *needle, size_t len) { | ^~~~~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ioc.c -o ioc.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c md5.c -o md5.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c oc.c -o oc.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c qap_decode.c -o qap_decode.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c qap_encode.c -o qap_encode.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c session.c -o session.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sha1.c -o sha1.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c standalone.c -o standalone.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tls.c -o tls.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ulog.c -o ulog.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c websockets.c -o websockets.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c winembed.c -o winembed.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o Rserve.so RSserver.o Rserv.o base64.o date.o http.o ioc.o md5.o oc.o qap_decode.o qap_encode.o session.o sha1.o standalone.o tls.o ulog.o utils.o websockets.o winembed.o -lssl -lcrypto -ldl -lcrypt -L/home/hornik/tmp/R-d-gcc-14/lib -lR gcc-14 -DSTANDALONE_RSERVE -DDAEMON -I. -Iinclude -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I/usr/local/include -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/home/hornik/tmp/R-d-gcc-14/include -o Rserve standalone.c md5.c session.c qap_decode.c qap_encode.c sha1.c base64.c websockets.c RSserver.c tls.c http.c oc.c ulog.c ioc.c utils.c date.c -Wl,-O1 -lssl -lcrypto -ldl -lcrypt -L"/home/hornik/tmp/R-d-gcc-14/lib" -lR -lssl -lcrypto -ldl -lcrypt In file included from standalone.c:6: Rserv.c: In function ‘auth_user’: Rserv.c:2439:21: warning: variable ‘ctrl_flag’ set but not used [-Wunused-but-set-variable] 2439 | int ctrl_flag = 0, u_uid = 0, u_gid = 0; | ^~~~~~~~~ Rserv.c: In function ‘Rserve_fork_compute’: Rserv.c:3304:25: warning: variable ‘cmd’ set but not used [-Wunused-but-set-variable] 3304 | int rn, cmd; | ^~~ Rserv.c: In function ‘OCAP_iteration’: Rserv.c:3460:29: warning: variable ‘cmd’ set but not used [-Wunused-but-set-variable] 3460 | int cmd; | ^~~ Rserv.c: In function ‘Rserve_QAP1_connected’: Rserv.c:3907:9: warning: variable ‘unaligned’ set but not used [-Wunused-but-set-variable] 3907 | int unaligned=0; | ^~~~~~~~~ In file included from http.c:10: bsdcmpt.h:17:20: warning: ‘strnstr’ defined but not used [-Wunused-function] 17 | static const char *strnstr(const char *haystack, const char *needle, size_t len) { | ^~~~~~~ gcc-14 -DSTANDALONE_RSERVE -DRSERV_DEBUG -DNODAEMON -I. -Iinclude -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -I/home/hornik/tmp/R-d-gcc-14/include -o Rserve.dbg standalone.c md5.c session.c qap_decode.c qap_encode.c sha1.c base64.c websockets.c RSserver.c tls.c http.c oc.c ulog.c ioc.c utils.c date.c -Wl,-O1 -lssl -lcrypto -ldl -lcrypt -L"/home/hornik/tmp/R-d-gcc-14/lib" -lR -lssl -lcrypto -ldl -lcrypt In file included from standalone.c:6: Rserv.c: In function ‘auth_user’: Rserv.c:2439:21: warning: variable ‘ctrl_flag’ set but not used [-Wunused-but-set-variable] 2439 | int ctrl_flag = 0, u_uid = 0, u_gid = 0; | ^~~~~~~~~ Rserv.c: In function ‘Rserve_fork_compute’: Rserv.c:3304:25: warning: variable ‘cmd’ set but not used [-Wunused-but-set-variable] 3304 | int rn, cmd; | ^~~ Rserv.c: In function ‘OCAP_iteration’: Rserv.c:3460:29: warning: variable ‘cmd’ set but not used [-Wunused-but-set-variable] 3460 | int cmd; | ^~~ Rserv.c: In function ‘Rserve_QAP1_connected’: Rserv.c:3907:9: warning: variable ‘unaligned’ set but not used [-Wunused-but-set-variable] 3907 | int unaligned=0; | ^~~~~~~~~ standalone.c: In function ‘main’: standalone.c:37:16: warning: variable ‘rs_silent’ set but not used [-Wunused-but-set-variable] 37 | int rs_silent = 0; | ^~~~~~~~~ In file included from http.c:10: bsdcmpt.h:17:20: warning: ‘strnstr’ defined but not used [-Wunused-function] 17 | static const char *strnstr(const char *haystack, const char *needle, size_t len) { | ^~~~~~~ ./mergefat Rserve "/home/hornik/tmp/R-d-gcc-14/bin/Rserve" ./mergefat Rserve.dbg "/home/hornik/tmp/R-d-gcc-14/bin/Rserve.dbg" make -C proxy 'CC=gcc-14 ' 'CPPFLAGS=-I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include ' CFLAGS='-g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native ' 'LDFLAGS=-Wl,-O1' 'LIBS=-lssl -lcrypto -ldl -lcrypt ' && cp -p proxy/forward . make[2]: Entering directory '/home/hornik/tmp/scratch/Rtmp5yTnKT/R.INSTALL2a054c33057730/Rserve/src/proxy' ln -sfn ../ulog.h ulog.h gcc-14 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o forward.o forward.c gcc-14 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o http.o http.c gcc-14 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o http_tools.o http_tools.c gcc-14 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o server.o server.c gcc-14 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o tls.o tls.c ln -sfn ../md5.h md5.h ln -sfn ../sha1.h sha1.h ln -sfn ../base64.c base64.c gcc-14 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o websockets.o websockets.c websockets.c: In function ‘WS_connected’: websockets.c:343:47: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 343 | ws_connected_fn_t connected = (ws_connected_fn_t) arg->srv->aux; | ^ websockets.c: In function ‘WS13_upgrade’: websockets.c:378:34: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 378 | srv->aux = (void*) connected; | ^ websockets.c:411:47: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 411 | ws_connected_fn_t connected = (ws_connected_fn_t) srv->aux; | ^ websockets.c: In function ‘create_WS_server’: websockets.c:868:34: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 868 | srv->aux = (void*) connected; | ^ ln -sfn ../md5.c md5.c gcc-14 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o md5.o md5.c ln -sfn ../sha1.c sha1.c gcc-14 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o sha1.o sha1.c gcc-14 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o base64.o base64.c gcc-14 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o date.o date.c ln -sfn ../ulog.c ulog.c gcc-14 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o ulog.o ulog.c gcc-14 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o chandler.o chandler.c gcc-14 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -I.. -DFORKED -I/usr/local/include -DRSERVE_PKG -I. -Iinclude -I/usr/local/include -I/usr/local/include -c -o rscript.o rscript.c gcc-14 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -Wl,-O1 -o forward forward.o http.o http_tools.o server.o tls.o websockets.o md5.o sha1.o base64.o date.o ulog.o chandler.o rscript.o -lssl -lcrypto -ldl -lcrypt make[2]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5yTnKT/R.INSTALL2a054c33057730/Rserve/src/proxy' make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5yTnKT/R.INSTALL2a054c33057730/Rserve/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Rserve/00new/Rserve ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rserve) begin installing package ‘RestRserve’ * installing *source* package ‘feather’ ... ** package ‘feather’ successfully unpacked and MD5 sums checked ** using staged installation Platform is little endian. Good. ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpv0Bvya/R.INSTALL2a055c4a72d5bf/feather/src' g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c feather-read.cpp -o feather-read.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c feather-types.cpp -o feather-types.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c feather-write.cpp -o feather-write.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c feather/buffer.cc -o feather/buffer.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c feather/feather-c.cc -o feather/feather-c.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c feather/io.cc -o feather/io.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c feather/metadata.cc -o feather/metadata.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c feather/reader.cc -o feather/reader.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c feather/status.cc -o feather/status.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c feather/types.cc -o feather/types.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c feather/writer.cc -o feather/writer.o ar rcs libfeather.a feather/buffer.o feather/feather-c.o feather/io.o feather/metadata.o feather/reader.o feather/status.o feather/types.o feather/writer.o g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o feather.so RcppExports.o feather-read.o feather-types.o feather-write.o -L. -lfeather -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpv0Bvya/R.INSTALL2a055c4a72d5bf/feather/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-feather/00new/feather/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (feather) * installing *source* package ‘RcppMsgPack’ ... ** package ‘RcppMsgPack’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmplj6D2S/R.INSTALL2a166e8f532e1/RcppMsgPack/src' g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c example1.cpp -o example1.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c example2.cpp -o example2.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c rcppmsgpack_c_functions.cpp -o rcppmsgpack_c_functions.o In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/aux_/na_assert.hpp:23, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/arg.hpp:25, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/variant/variant_fwd.hpp:19, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/variant/variant.hpp:26, from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/variant.hpp:17, from anyvector.h:3, from rcppmsgpack_c_functions.cpp:3: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o RcppMsgPack.so RcppExports.o example1.o example2.o rcppmsgpack_c_functions.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmplj6D2S/R.INSTALL2a166e8f532e1/RcppMsgPack/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RcppMsgPack/00new/RcppMsgPack/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppMsgPack) * installing *source* package ‘aphid’ ... ** package ‘aphid’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeB6jKZ/R.INSTALL2a239e5926171d/aphid/src' g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c ViterbiC.cpp -o ViterbiC.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c init.cpp -o init.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c map.cpp -o map.o map.cpp: In function ‘Rcpp::LogicalVector map(Rcpp::NumericMatrix, Rcpp::LogicalMatrix, Rcpp::List, Rcpp::NumericVector, Rcpp::NumericVector, double)’: map.cpp:52:25: warning: suggest parentheses around operand of ‘!’ or change ‘&’ to ‘&&’ or ‘!’ to ‘~’ [-Wparentheses] 52 | tcounts(_, 0) = !notgaps(_, i) & !notgaps(_, j) & zeroinserts; | ^~~~~~~~~~~~~~ map.cpp:53:25: warning: suggest parentheses around operand of ‘!’ or change ‘&’ to ‘&&’ or ‘!’ to ‘~’ [-Wparentheses] 53 | tcounts(_, 1) = !notgaps(_, i) & notgaps(_, j) & zeroinserts; | ^~~~~~~~~~~~~~ map.cpp:54:25: warning: suggest parentheses around operand of ‘!’ or change ‘&’ to ‘&&’ or ‘!’ to ‘~’ [-Wparentheses] 54 | tcounts(_, 2) = !notgaps(_, i) & !zeroinserts; | ^~~~~~~~~~~~~~ map.cpp:58:25: warning: suggest parentheses around operand of ‘!’ or change ‘&’ to ‘&&’ or ‘!’ to ‘~’ [-Wparentheses] 58 | tcounts(_, 6) = !notgaps(_, j) & !zeroinserts; | ^~~~~~~~~~~~~~ map.cpp:71:25: warning: suggest parentheses around operand of ‘!’ or change ‘&’ to ‘&&’ or ‘!’ to ‘~’ [-Wparentheses] 71 | tcounts(_, 0) = !notgaps(_, i) & !notgaps(_, j); //DD | ^~~~~~~~~~~~~~ map.cpp:72:25: warning: suggest parentheses around operand of ‘!’ or change ‘&’ to ‘&&’ or ‘!’ to ‘~’ [-Wparentheses] 72 | tcounts(_, 1) = !notgaps(_, i) & notgaps(_, j); //DM | ^~~~~~~~~~~~~~ g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c utils.cpp -o utils.o g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o aphid.so RcppExports.o ViterbiC.o init.o map.o utils.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeB6jKZ/R.INSTALL2a239e5926171d/aphid/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-aphid/00new/aphid/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (aphid) * installing *source* package ‘paws.storage’ ... ** package ‘paws.storage’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (paws.storage) * installing *source* package ‘RestRserve’ ... ** package ‘RestRserve’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplgmdvQ/R.INSTALL2a24af50cbc4c0/RestRserve/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c format_cookies.cpp -o format_cookies.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c format_headers.cpp -o format_headers.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c parse_cookies.cpp -o parse_cookies.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c parse_headers.cpp -o parse_headers.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c parse_multipart.cpp -o parse_multipart.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c url_decode.cpp -o url_decode.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c url_encode.cpp -o url_encode.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c utils.cpp -o utils.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o RestRserve.so RcppExports.o format_cookies.o format_headers.o parse_cookies.o parse_headers.o parse_multipart.o url_decode.o url_encode.o utils.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplgmdvQ/R.INSTALL2a24af50cbc4c0/RestRserve/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RestRserve/00new/RestRserve/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RestRserve) * installing *source* package ‘eulerr’ ... ** package ‘eulerr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfAj6q0/R.INSTALL2a1f961e441a8/eulerr/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c compute-areas.cpp -o compute-areas.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c conic.cpp -o conic.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c ellipse.cpp -o ellipse.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c helpers.cpp -o helpers.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c intersections.cpp -o intersections.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c loss.cpp -o loss.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c optim_final.cpp -o optim_final.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c optim_init.cpp -o optim_init.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c point.cpp -o point.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c solve_cubic.cpp -o solve_cubic.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c utils.cpp -o utils.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o eulerr.so RcppExports.o compute-areas.o conic.o ellipse.o helpers.o intersections.o loss.o optim_final.o optim_init.o point.o solve_cubic.o utils.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfAj6q0/R.INSTALL2a1f961e441a8/eulerr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-eulerr/00new/eulerr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (eulerr) * installing *source* package ‘nanoparquet’ ... ** package ‘nanoparquet’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmppTz9fW/R.INSTALL2a1527605f0493/nanoparquet/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c rwrapper.cpp -o rwrapper.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c protect.cpp -o protect.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c read.cpp -o read.o In file included from lib/nanoparquet.h:8, from read.cpp:4: lib/bytebuffer.h: In member function ‘virtual std::streamsize ByteBuffer::xsputn(const char*, std::streamsize)’: lib/bytebuffer.h:34:15: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘std::streamsize’ {aka ‘long int’} [-Wsign-compare] 34 | if (space < n) { | ~~~~~~^~~ read.cpp: In function ‘SEXPREC* nanoparquet_read(SEXP)’: read.cpp:59:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 59 | for (auto i = 0; i < ncols; i++) { | ~~^~~~~~~ read.cpp:228:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 228 | for (auto i = 0; i < strings.size(); i++) { | ~~^~~~~~~~~~~~~~~~ read.cpp:324:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 324 | for (auto i = 0; i < type_len; i++) { | ~~^~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c write.cpp -o write.o In file included from lib/nanoparquet.h:8, from write.cpp:1: lib/bytebuffer.h: In member function ‘virtual std::streamsize ByteBuffer::xsputn(const char*, std::streamsize)’: lib/bytebuffer.h:34:15: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘std::streamsize’ {aka ‘long int’} [-Wsign-compare] 34 | if (space < n) { | ~~~~~~^~~ In file included from write.cpp:6: lib/memstream.h: In member function ‘virtual std::streamsize MemStream::xsputn(const char*, std::streamsize)’: lib/memstream.h:37:13: warning: comparison of integer expressions of different signedness: ‘std::streamsize’ {aka ‘long int’} and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare] 37 | if (n > space) { | ~~^~~~~~~ write.cpp: In member function ‘virtual void RParquetOutFile::write_int32(std::ostream&, uint32_t, uint64_t, uint64_t)’: write.cpp:154:13: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 154 | if (until > Rf_xlength(col)) { | ~~~~~~^~~~~~~~~~~~~~~~~ write.cpp: In member function ‘virtual void RParquetOutFile::write_int64(std::ostream&, uint32_t, uint64_t, uint64_t)’: write.cpp:165:13: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 165 | if (until > Rf_xlength(col)) { | ~~~~~~^~~~~~~~~~~~~~~~~ write.cpp: In member function ‘virtual void RParquetOutFile::write_double(std::ostream&, uint32_t, uint64_t, uint64_t)’: write.cpp:193:13: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 193 | if (until > Rf_xlength(col)) { | ~~~~~~^~~~~~~~~~~~~~~~~ write.cpp: In member function ‘virtual void RParquetOutFile::write_byte_array(std::ostream&, uint32_t, uint64_t, uint64_t)’: write.cpp:203:13: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 203 | if (until > Rf_xlength(col)) { | ~~~~~~^~~~~~~~~~~~~~~~~ write.cpp: In member function ‘virtual uint32_t RParquetOutFile::get_size_byte_array(uint32_t, uint32_t, uint64_t, uint64_t)’: write.cpp:221:13: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 221 | if (until > Rf_xlength(col)) { | ~~~~~~^~~~~~~~~~~~~~~~~ write.cpp: In function ‘void write_boolean_impl(std::ostream&, SEXP, uint64_t, uint64_t)’: write.cpp:237:13: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 237 | if (until > Rf_xlength(col)) { | ~~~~~~^~~~~~~~~~~~~~~~~ write.cpp: In member function ‘virtual void RParquetOutFile::write_boolean_as_int(std::ostream&, uint32_t, uint64_t, uint64_t)’: write.cpp:275:13: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 275 | if (until > Rf_xlength(col)) { | ~~~~~~^~~~~~~~~~~~~~~~~ write.cpp: In member function ‘virtual uint32_t RParquetOutFile::write_present(std::ostream&, uint32_t, uint64_t, uint64_t)’: write.cpp:285:13: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 285 | if (until > Rf_xlength(col)) { | ~~~~~~^~~~~~~~~~~~~~~~~ write.cpp: In member function ‘virtual void RParquetOutFile::write_present_int32(std::ostream&, uint32_t, uint32_t, uint64_t, uint64_t)’: write.cpp:344:13: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 344 | if (until > Rf_xlength(col)) { | ~~~~~~^~~~~~~~~~~~~~~~~ write.cpp: In member function ‘virtual void RParquetOutFile::write_present_int64(std::ostream&, uint32_t, uint32_t, uint64_t, uint64_t)’: write.cpp:363:13: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 363 | if (until > Rf_xlength(col)) { | ~~~~~~^~~~~~~~~~~~~~~~~ write.cpp: In member function ‘virtual void RParquetOutFile::write_present_double(std::ostream&, uint32_t, uint32_t, uint64_t, uint64_t)’: write.cpp:400:13: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 400 | if (until > Rf_xlength(col)) { | ~~~~~~^~~~~~~~~~~~~~~~~ write.cpp: In member function ‘virtual void RParquetOutFile::write_present_boolean_as_int(std::ostream&, uint32_t, uint32_t, uint64_t, uint64_t)’: write.cpp:417:13: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 417 | if (until > Rf_xlength(col)) { | ~~~~~~^~~~~~~~~~~~~~~~~ write.cpp: In member function ‘virtual void RParquetOutFile::write_present_byte_array(std::ostream&, uint32_t, uint32_t, uint64_t, uint64_t)’: write.cpp:437:13: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 437 | if (until > Rf_xlength(col)) { | ~~~~~~^~~~~~~~~~~~~~~~~ write.cpp: In member function ‘virtual void RParquetOutFile::write_present_boolean(std::ostream&, uint32_t, uint32_t, uint64_t, uint64_t)’: write.cpp:461:13: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 461 | if (until > Rf_xlength(col)) { | ~~~~~~^~~~~~~~~~~~~~~~~ write.cpp: In member function ‘virtual void RParquetOutFile::write_dictionary(std::ostream&, uint32_t)’: write.cpp:600:28: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 600 | for (uint64_t i = 0; i < len; i++) { | ~~^~~~~ write.cpp: In member function ‘virtual void RParquetOutFile::write_dictionary_indices(std::ostream&, uint32_t, uint64_t, uint64_t)’: write.cpp:634:13: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 634 | if (until > Rf_xlength(col)) { | ~~~~~~^~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c read-metadata.cpp -o read-metadata.o In file included from lib/nanoparquet.h:8, from read-metadata.cpp:1: lib/bytebuffer.h: In member function ‘virtual std::streamsize ByteBuffer::xsputn(const char*, std::streamsize)’: lib/bytebuffer.h:34:15: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘std::streamsize’ {aka ‘long int’} [-Wsign-compare] 34 | if (space < n) { | ~~~~~~^~~ read-metadata.cpp: In function ‘SEXPREC* convert_key_value_metadata(const parquet::FileMetaData&)’: read-metadata.cpp:140:28: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 140 | for (R_xlen_t i = 0; i < kvsize; i++) { | ~~^~~~~~~~ read-metadata.cpp: In function ‘SEXPREC* convert_row_groups(const char*, std::vector&)’: read-metadata.cpp:254:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 254 | for (auto i = 0; i < nrgs; i++) { | ~~^~~~~~ read-metadata.cpp: In function ‘SEXPREC* convert_column_chunks(const char*, std::vector&)’: read-metadata.cpp:304:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 304 | for (auto i = 0; i < rgs.size(); i++) { | ~~^~~~~~~~~~~~ read-metadata.cpp:332:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 332 | for (int i = 0; i < rgs.size(); i++) { | ~~^~~~~~~~~~~~ read-metadata.cpp:333:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 333 | for (int j = 0; j < rgs[i].columns.size(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ read-metadata.cpp:352:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 352 | for (auto k = 0; k < cmd.encodings.size(); k++) { | ~~^~~~~~~~~~~~~~~~~~~~~~ read-metadata.cpp:356:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 356 | for (auto k = 0; k < cmd.path_in_schema.size(); k++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c read-pages.cpp -o read-pages.o In file included from lib/nanoparquet.h:8, from read-pages.cpp:1: lib/bytebuffer.h: In member function ‘virtual std::streamsize ByteBuffer::xsputn(const char*, std::streamsize)’: lib/bytebuffer.h:34:15: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘std::streamsize’ {aka ‘long int’} [-Wsign-compare] 34 | if (space < n) { | ~~~~~~^~~ read-pages.cpp: In function ‘SEXPREC* nanoparquet_read_pages(SEXP)’: read-pages.cpp:24:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 24 | for (auto i = 0; i < rgs.size(); i++) { | ~~^~~~~~~~~~~~ read-pages.cpp:25:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 25 | for (auto j = 0; j < rgs[i].columns.size(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ read-pages.cpp:98:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 98 | for (auto i = 0; i < rgs.size(); i++) { | ~~^~~~~~~~~~~~ read-pages.cpp:99:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 99 | for (auto j = 0; j < rgs[i].columns.size(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ read-pages.cpp: In function ‘PageData find_page(nanoparquet::ParquetFile&, int64_t)’: read-pages.cpp:210:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 210 | for (auto i = 0; i < rgs.size(); i++) { | ~~^~~~~~~~~~~~ read-pages.cpp:211:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 211 | for (auto j = 0; j < rgs[i].columns.size(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ read-pages.cpp: In function ‘SEXPREC* nanoparquet_read_page(SEXP, SEXP)’: read-pages.cpp:303:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 303 | for (int i = 0; i < schema.size(); i++) { | ~~^~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c arrow-schema.cpp -o arrow-schema.o In file included from arrow-schema.cpp:7: lib/bytebuffer.h: In member function ‘virtual std::streamsize ByteBuffer::xsputn(const char*, std::streamsize)’: lib/bytebuffer.h:34:15: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘std::streamsize’ {aka ‘long int’} [-Wsign-compare] 34 | if (space < n) { | ~~~~~~^~~ arrow-schema.cpp: In function ‘SEXPREC* nanoparquet_parse_arrow_schema_impl(uint8_t*, uint32_t)’: arrow-schema.cpp:80:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 80 | for (auto i = 0; i < sch->fields.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ arrow-schema.cpp:187:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 187 | for (auto j = 0; j < ft->typeIds.size(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~ arrow-schema.cpp:262:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 262 | for (auto j = 0; j < kvlen; j++) { | ~~^~~~~~~ arrow-schema.cpp:280:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 280 | for (auto i = 0; i < sch->custom_metadata.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arrow-schema.cpp:294:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 294 | for (auto i = 0; i < sch->features.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~ arrow-schema.cpp: In function ‘SEXPREC* nanoparquet_encode_arrow_schema(SEXP)’: arrow-schema.cpp:379:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 379 | for (auto i = 0; i < nfields; i++) { | ~~^~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c base64.cpp -o base64.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c r-base64.cpp -o r-base64.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c snappy.cpp -o snappy.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c encodings.cpp -o encodings.o In file included from lib/nanoparquet.h:8, from lib/RleBpDecoder.h:5, from encodings.cpp:1: lib/bytebuffer.h: In member function ‘virtual std::streamsize ByteBuffer::xsputn(const char*, std::streamsize)’: lib/bytebuffer.h:34:15: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘std::streamsize’ {aka ‘long int’} [-Wsign-compare] 34 | if (space < n) { | ~~~~~~^~~ lib/RleBpDecoder.h: In instantiation of ‘int RleBpDecoder::GetBatch(T*, int) [with T = unsigned int]’: encodings.cpp:30:19: required from here 30 | decoder.GetBatch((uint32_t *)INTEGER(res), num_values); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/RleBpDecoder.h:30:24: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 30 | while (values_read < batch_size) { | ~~~~~~~~~~~~^~~~~~~~~~~~ In file included from encodings.cpp:2: lib/RleBpEncoder.h: In instantiation of ‘uint32_t RleBpEncode(const T*, uint32_t, uint8_t, uint8_t*, uint32_t) [with T = int; uint32_t = unsigned int; uint8_t = unsigned char]’: encodings.cpp:46:26: required from here 46 | size_t rs = RleBpEncode(input, input_len, bw, output, os); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/RleBpEncoder.h:40:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 40 | if (reps >= min_reps) { | ~~~~~^~~~~~~~~~~ In file included from encodings.cpp:3: lib/DbpDecoder.h: In instantiation of ‘uint8_t* DbpDecoder::decode(T*) [with T = int; Tunsigned = unsigned int; uint8_t = unsigned char]’: encodings.cpp:64:13: required from here 64 | dbp.decode(INTEGER(res)); | ~~~~~~~~~~^~~~~~~~~~~~~~ lib/DbpDecoder.h:68:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 68 | for (auto i = 0; todo > 0 && i < mini_blocks_per_block; i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ lib/DbpDecoder.h:84:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare] 84 | for (auto i = 0; i < mb_vals; i++) { | ~~^~~~~~~~~ lib/DbpDecoder.h: In instantiation of ‘uint8_t* DbpDecoder::decode(T*) [with T = long int; Tunsigned = long unsigned int; uint8_t = unsigned char]’: encodings.cpp:82:13: required from here 82 | dbp.decode((int64_t*) REAL(res)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ lib/DbpDecoder.h:68:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 68 | for (auto i = 0; todo > 0 && i < mini_blocks_per_block; i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ lib/DbpDecoder.h:84:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare] 84 | for (auto i = 0; i < mb_vals; i++) { | ~~^~~~~~~~~ In file included from lib/DbpDecoder.h:6: lib/decode-utils.h: In instantiation of ‘void unpack_bits(uint8_t*, uint64_t, uint8_t, T*, uint64_t) [with T = unsigned int; uint8_t = unsigned char; uint64_t = long unsigned int]’: encodings.cpp:100:24: required from here 100 | unpack_bits( | ~~~~~~~~~~~~~~~~~~~~~^ 101 | RAW(x), | ~~~~~~~ 102 | Rf_xlength(x), | ~~~~~~~~~~~~~~ 103 | INTEGER(bit_width)[0], | ~~~~~~~~~~~~~~~~~~~~~~ 104 | (uint32_t*) INTEGER(res), | ~~~~~~~~~~~~~~~~~~~~~~~~~ 105 | cn | ~~ 106 | ); | ~ lib/decode-utils.h:58:21: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 58 | while (num_values > output_group_size) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ lib/decode-utils.h: In instantiation of ‘void unpack_bits(uint8_t*, uint64_t, uint8_t, T*, uint64_t) [with T = long unsigned int; uint8_t = unsigned char; uint64_t = long unsigned int]’: lib/DbpDecoder.h:77:31: required from ‘uint8_t* DbpDecoder::decode(T*) [with T = long int; Tunsigned = long unsigned int; uint8_t = unsigned char]’ 77 | unpack_bits( | ~~~~~~~~~~~~~~~~~~~~~~^ 78 | buf->start, | ~~~~~~~~~~~ 79 | mb_len, | ~~~~~~~ 80 | bw, | ~~~ 81 | (Tunsigned*) values, | ~~~~~~~~~~~~~~~~~~~~ 82 | mb_vals | ~~~~~~~ 83 | ); | ~ encodings.cpp:82:13: required from here 82 | dbp.decode((int64_t*) REAL(res)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ lib/decode-utils.h:58:21: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 58 | while (num_values > output_group_size) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c dictionary-encoding.cpp -o dictionary-encoding.o dictionary-encoding.cpp: In function ‘SEXPREC* nanoparquet_avg_run_length(SEXP, SEXP)’: dictionary-encoding.cpp:220:11: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 220 | if (len == -1) { | ~~~~^~~~~ dictionary-encoding.cpp:230:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 230 | for (auto i = 0; i < len; i++, xx++) { | ~~^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c test.cpp -o test.o In file included from test.cpp:2: lib/memstream.h: In member function ‘virtual std::streamsize MemStream::xsputn(const char*, std::streamsize)’: lib/memstream.h:37:13: warning: comparison of integer expressions of different signedness: ‘std::streamsize’ {aka ‘long int’} and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare] 37 | if (n > space) { | ~~^~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c lib/ParquetFile.cpp -o lib/ParquetFile.o In file included from lib/nanoparquet.h:8, from lib/ParquetFile.cpp:14: lib/bytebuffer.h: In member function ‘virtual std::streamsize ByteBuffer::xsputn(const char*, std::streamsize)’: lib/bytebuffer.h:34:15: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘std::streamsize’ {aka ‘long int’} [-Wsign-compare] 34 | if (space < n) { | ~~~~~~^~~ lib/ParquetFile.cpp: In member function ‘void nanoparquet::ParquetFile::read_checks()’: lib/ParquetFile.cpp:139:45: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 139 | if (file_meta_data.schema[0].num_children != lib/ParquetFile.cpp: In member function ‘void ColumnScan::scan_dict_page(nanoparquet::ResultColumn&)’: lib/ParquetFile.cpp:268:49: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare] 268 | for (int32_t dict_index = 0; dict_index < dict_size; dict_index++) { | ~~~~~~~~~~~^~~~~~~~~~~ lib/ParquetFile.cpp: In member function ‘void ColumnScan::scan_data_page_dict(nanoparquet::ResultColumn&)’: lib/ParquetFile.cpp:564:30: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 564 | for (uint32_t i = 0; i < num_values; i++) { | ~~^~~~~~~~~~~~ lib/ParquetFile.cpp: In member function ‘void ColumnScan::scan_data_page_rle(nanoparquet::ResultColumn&)’: lib/ParquetFile.cpp:641:28: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 641 | for (uint32_t i = 0; i < num_values; i++) { | ~~^~~~~~~~~~~~ lib/ParquetFile.cpp:655:20: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 655 | val_offset < num_values; | ~~~~~~~~~~~^~~~~~~~~~~~ lib/ParquetFile.cpp: In member function ‘void ColumnScan::scan_data_page_delta_binary_packed(nanoparquet::ResultColumn&)’: lib/ParquetFile.cpp:680:37: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 680 | for (uint32_t i = 0, j = 0; i < num_values; i++) { | ~~^~~~~~~~~~~~ lib/ParquetFile.cpp:695:37: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 695 | for (uint32_t i = 0, j = 0; i < num_values; i++) { | ~~^~~~~~~~~~~~ lib/ParquetFile.cpp: In member function ‘void ColumnScan::scan_data_page_delta_length_byte_array(nanoparquet::ResultColumn&)’: lib/ParquetFile.cpp:735:35: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 735 | for (uint32_t i = 0, j = 0; i < num_values; i++) { | ~~^~~~~~~~~~~~ lib/ParquetFile.cpp: In member function ‘void ColumnScan::scan_data_page_delta_byte_array(nanoparquet::ResultColumn&)’: lib/ParquetFile.cpp:781:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 781 | for (auto i = 0; i < num_non_null_values; i++) shc_len += pre_lengths[i]; | ~~^~~~~~~~~~~~~~~~~~~~~ lib/ParquetFile.cpp:782:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 782 | for (auto i = 0; i < num_non_null_values; i++) shc_len += suf_lengths[i]; | ~~^~~~~~~~~~~~~~~~~~~~~ lib/ParquetFile.cpp:790:35: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 790 | for (uint32_t i = 0, j = 0; i < num_values; i++) { | ~~^~~~~~~~~~~~ lib/ParquetFile.cpp: In member function ‘void ColumnScan::scan_data_page_byte_stream_split(nanoparquet::ResultColumn&)’: lib/ParquetFile.cpp:881:30: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 881 | for (uint32_t i = 0; i < num_values; i++) { | ~~^~~~~~~~~~~~ lib/ParquetFile.cpp:885:37: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 885 | for (uint32_t i = 0, j = 0; i < num_values; i++) { | ~~^~~~~~~~~~~~ lib/ParquetFile.cpp:894:32: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 894 | for (uint32_t b = 0; b < type_len; b++) { | ~~^~~~~~~~~~ lib/ParquetFile.cpp: In member function ‘void nanoparquet::ParquetFile::read_chunk(int64_t, int64_t, int8_t*)’: lib/ParquetFile.cpp:1257:12: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 1257 | if (size > file_size - offset) { | ~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from lib/ParquetFile.cpp:15: lib/RleBpDecoder.h: In instantiation of ‘int RleBpDecoder::GetBatch(T*, int) [with T = unsigned char]’: lib/ParquetFile.cpp:340:28: required from here 340 | dec.GetBatch(defined_ptr, num_values); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ lib/RleBpDecoder.h:30:24: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 30 | while (values_read < batch_size) { | ~~~~~~~~~~~~^~~~~~~~~~~~ lib/RleBpDecoder.h: In instantiation of ‘int RleBpDecoder::GetBatchSpaced(uint32_t, uint32_t, const uint8_t*, T*) [with T = unsigned int; uint32_t = unsigned int; uint8_t = unsigned char]’: lib/ParquetFile.cpp:570:37: required from here 570 | dec.GetBatchSpaced(num_values, null_count, defined_ptr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 | offsets.get()); | ~~~~~~~~~~~~~~ lib/RleBpDecoder.h:104:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 104 | if (actual_read != literal_batch) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ lib/RleBpDecoder.h:113:32: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 113 | while (literals_read < literal_batch) { | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ lib/RleBpDecoder.h: In instantiation of ‘int RleBpDecoder::GetBatch(T*, int) [with T = unsigned int]’: lib/ParquetFile.cpp:573:31: required from here 573 | dec.GetBatch(offsets.get(), num_values); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/RleBpDecoder.h:30:24: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 30 | while (values_read < batch_size) { | ~~~~~~~~~~~~^~~~~~~~~~~~ lib/RleBpDecoder.h: In instantiation of ‘int RleBpDecoder::GetBatchSpaced(uint32_t, uint32_t, const uint8_t*, T*) [with T = bool; uint32_t = unsigned int; uint8_t = unsigned char]’: lib/ParquetFile.cpp:647:31: required from here 647 | dec.GetBatchSpaced(num_values, null_count, defined_ptr, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 | offsets.get()); | ~~~~~~~~~~~~~~ lib/RleBpDecoder.h:104:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 104 | if (actual_read != literal_batch) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~ lib/RleBpDecoder.h:113:32: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 113 | while (literals_read < literal_batch) { | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ lib/RleBpDecoder.h: In instantiation of ‘int RleBpDecoder::GetBatch(T*, int) [with T = bool]’: lib/ParquetFile.cpp:650:25: required from here 650 | dec.GetBatch(offsets.get(), num_values); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/RleBpDecoder.h:30:24: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 30 | while (values_read < batch_size) { | ~~~~~~~~~~~~^~~~~~~~~~~~ In file included from lib/ParquetFile.cpp:16: lib/DbpDecoder.h: In instantiation of ‘uint8_t* DbpDecoder::decode(T*) [with T = int; Tunsigned = unsigned int; uint8_t = unsigned char]’: lib/ParquetFile.cpp:679:17: required from here 679 | dec.decode(vals.get()); | ~~~~~~~~~~^~~~~~~~~~~~ lib/DbpDecoder.h:68:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 68 | for (auto i = 0; todo > 0 && i < mini_blocks_per_block; i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ lib/DbpDecoder.h:84:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare] 84 | for (auto i = 0; i < mb_vals; i++) { | ~~^~~~~~~~~ lib/DbpDecoder.h: In instantiation of ‘uint8_t* DbpDecoder::decode(T*) [with T = long int; Tunsigned = long unsigned int; uint8_t = unsigned char]’: lib/ParquetFile.cpp:694:17: required from here 694 | dec.decode(vals.get()); | ~~~~~~~~~~^~~~~~~~~~~~ lib/DbpDecoder.h:68:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 68 | for (auto i = 0; todo > 0 && i < mini_blocks_per_block; i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ lib/DbpDecoder.h:84:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare] 84 | for (auto i = 0; i < mb_vals; i++) { | ~~^~~~~~~~~ lib/ParquetFile.cpp: In instantiation of ‘void ColumnScan::fill_values_bss(nanoparquet::ResultColumn&) [with T = float]’: lib/ParquetFile.cpp:854:29: required from here 854 | fill_values_bss(result_col); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ lib/ParquetFile.cpp:830:28: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 830 | for (uint32_t i = 0; i < num_values; i++) { | ~~^~~~~~~~~~~~ lib/ParquetFile.cpp:842:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 842 | for (int b = 0; b < sizeof(T); b++) { | ~~^~~~~~~~~~~ lib/ParquetFile.cpp: In instantiation of ‘void ColumnScan::fill_values_bss(nanoparquet::ResultColumn&) [with T = double]’: lib/ParquetFile.cpp:857:30: required from here 857 | fill_values_bss(result_col); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ lib/ParquetFile.cpp:830:28: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 830 | for (uint32_t i = 0; i < num_values; i++) { | ~~^~~~~~~~~~~~ lib/ParquetFile.cpp:842:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 842 | for (int b = 0; b < sizeof(T); b++) { | ~~^~~~~~~~~~~ lib/ParquetFile.cpp: In instantiation of ‘void ColumnScan::fill_values_bss(nanoparquet::ResultColumn&) [with T = int]’: lib/ParquetFile.cpp:860:31: required from here 860 | fill_values_bss(result_col); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ lib/ParquetFile.cpp:830:28: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 830 | for (uint32_t i = 0; i < num_values; i++) { | ~~^~~~~~~~~~~~ lib/ParquetFile.cpp:842:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 842 | for (int b = 0; b < sizeof(T); b++) { | ~~^~~~~~~~~~~ lib/ParquetFile.cpp: In instantiation of ‘void ColumnScan::fill_values_bss(nanoparquet::ResultColumn&) [with T = long int]’: lib/ParquetFile.cpp:863:31: required from here 863 | fill_values_bss(result_col); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ lib/ParquetFile.cpp:830:28: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 830 | for (uint32_t i = 0; i < num_values; i++) { | ~~^~~~~~~~~~~~ lib/ParquetFile.cpp:842:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 842 | for (int b = 0; b < sizeof(T); b++) { | ~~^~~~~~~~~~~ In file included from lib/DbpDecoder.h:6: lib/decode-utils.h: In instantiation of ‘void unpack_bits(uint8_t*, uint64_t, uint8_t, T*, uint64_t) [with T = unsigned int; uint8_t = unsigned char; uint64_t = long unsigned int]’: lib/DbpDecoder.h:77:31: required from ‘uint8_t* DbpDecoder::decode(T*) [with T = int; Tunsigned = unsigned int; uint8_t = unsigned char]’ 77 | unpack_bits( | ~~~~~~~~~~~~~~~~~~~~~~^ 78 | buf->start, | ~~~~~~~~~~~ 79 | mb_len, | ~~~~~~~ 80 | bw, | ~~~ 81 | (Tunsigned*) values, | ~~~~~~~~~~~~~~~~~~~~ 82 | mb_vals | ~~~~~~~ 83 | ); | ~ lib/ParquetFile.cpp:679:17: required from here 679 | dec.decode(vals.get()); | ~~~~~~~~~~^~~~~~~~~~~~ lib/decode-utils.h:58:21: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 58 | while (num_values > output_group_size) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ lib/decode-utils.h: In instantiation of ‘void unpack_bits(uint8_t*, uint64_t, uint8_t, T*, uint64_t) [with T = long unsigned int; uint8_t = unsigned char; uint64_t = long unsigned int]’: lib/DbpDecoder.h:77:31: required from ‘uint8_t* DbpDecoder::decode(T*) [with T = long int; Tunsigned = long unsigned int; uint8_t = unsigned char]’ 77 | unpack_bits( | ~~~~~~~~~~~~~~~~~~~~~~^ 78 | buf->start, | ~~~~~~~~~~~ 79 | mb_len, | ~~~~~~~ 80 | bw, | ~~~ 81 | (Tunsigned*) values, | ~~~~~~~~~~~~~~~~~~~~ 82 | mb_vals | ~~~~~~~ 83 | ); | ~ lib/ParquetFile.cpp:694:17: required from here 694 | dec.decode(vals.get()); | ~~~~~~~~~~^~~~~~~~~~~~ lib/decode-utils.h:58:21: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 58 | while (num_values > output_group_size) { | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ In member function ‘int RleBpDecoder::GetBatchSpaced(uint32_t, uint32_t, const uint8_t*, T*) [with T = bool]’, inlined from ‘void ColumnScan::scan_data_page_rle(nanoparquet::ResultColumn&)’ at lib/ParquetFile.cpp:647:31: lib/RleBpDecoder.h:110:27: warning: ‘indices’ may be used uninitialized [-Wmaybe-uninitialized] 110 | *out++ = indices[0]; | ~~~~~~~^ lib/RleBpDecoder.h: In member function ‘void ColumnScan::scan_data_page_rle(nanoparquet::ResultColumn&)’: lib/RleBpDecoder.h:100:13: note: ‘indices’ declared here 100 | T indices[kBufferSize]; | ^~~~~~~ In member function ‘int RleBpDecoder::GetBatchSpaced(uint32_t, uint32_t, const uint8_t*, T*) [with T = unsigned int]’, inlined from ‘void ColumnScan::scan_data_page_dict(nanoparquet::ResultColumn&)’ at lib/ParquetFile.cpp:570:37: lib/RleBpDecoder.h:110:27: warning: ‘indices’ may be used uninitialized [-Wmaybe-uninitialized] 110 | *out++ = indices[0]; | ~~~~~~~^ lib/RleBpDecoder.h: In member function ‘void ColumnScan::scan_data_page_dict(nanoparquet::ResultColumn&)’: lib/RleBpDecoder.h:100:13: note: ‘indices’ declared here 100 | T indices[kBufferSize]; | ^~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c lib/ParquetOutFile.cpp -o lib/ParquetOutFile.o In file included from lib/nanoparquet.h:8, from lib/ParquetOutFile.cpp:12: lib/bytebuffer.h: In member function ‘virtual std::streamsize ByteBuffer::xsputn(const char*, std::streamsize)’: lib/bytebuffer.h:34:15: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘std::streamsize’ {aka ‘long int’} [-Wsign-compare] 34 | if (space < n) { | ~~~~~~^~~ lib/ParquetOutFile.cpp: In member function ‘void nanoparquet::ParquetOutFile::write_data_pages(uint32_t)’: lib/ParquetOutFile.cpp:591:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 591 | for (auto i = 0; i < num_pages; i++) { | ~~^~~~~~~~~~~ In file included from lib/ParquetOutFile.cpp:13: lib/RleBpEncoder.h: In instantiation of ‘uint32_t RleBpEncode(const T*, uint32_t, uint8_t, uint8_t*, uint32_t) [with T = int; uint32_t = unsigned int; uint8_t = unsigned char]’: lib/ParquetOutFile.cpp:438:32: required from here 438 | size_t tgt_size = RleBpEncode( | ~~~~~~~~~~~^ 439 | (int*) src.ptr, | ~~~~~~~~~~~~~~~ 440 | src_size, | ~~~~~~~~~ 441 | bit_width, | ~~~~~~~~~~ 442 | (uint8_t *) tgt.ptr + skip + (add_bit_width ? 1 : 0) + (add_size ? 4 : 0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 | tgt_size_est | ~~~~~~~~~~~~ 444 | ); | ~ lib/RleBpEncoder.h:40:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 40 | if (reps >= min_reps) { | ~~~~~^~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c lib/RleBpDecoder.cpp -o lib/RleBpDecoder.o In file included from lib/nanoparquet.h:8, from lib/RleBpDecoder.h:5, from lib/RleBpDecoder.cpp:1: lib/bytebuffer.h: In member function ‘virtual std::streamsize ByteBuffer::xsputn(const char*, std::streamsize)’: lib/bytebuffer.h:34:15: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘std::streamsize’ {aka ‘long int’} [-Wsign-compare] 34 | if (space < n) { | ~~~~~~^~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c parquet/parquet_types.cpp -o parquet/parquet_types.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c thrift/protocol/TProtocol.cpp -o thrift/protocol/TProtocol.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c thrift/transport/TTransportException.cpp -o thrift/transport/TTransportException.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c thrift/transport/TBufferTransports.cpp -o thrift/transport/TBufferTransports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c fastpforlib/bitpacking.cpp -o fastpforlib/bitpacking.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c snappy/snappy.cc -o snappy/snappy.o snappy/snappy.cc: In member function ‘void snappy::SnappySinkAllocator::Flush(size_t)’: snappy/snappy.cc:1599:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1599 | for (int i = 0; i < blocks_.size(); ++i) { | ~~^~~~~~~~~~~~~~~~ In file included from snappy/snappy-internal.h:34, from snappy/snappy.cc:30: snappy/snappy.cc: In instantiation of ‘bool snappy::SnappyScatteredWriter::AppendFromSelf(size_t, size_t) [with Allocator = snappy::SnappySinkAllocator; size_t = long unsigned int]’: snappy/snappy.cc:902:36: required from ‘void snappy::SnappyDecompressor::DecompressAllTags(Writer*) [with Writer = snappy::SnappyScatteredWriter]’ 902 | if (!writer->AppendFromSelf(copy_offset + trailer, length)) { | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ snappy/snappy.cc:991:34: required from ‘bool snappy::InternalUncompressAllTags(SnappyDecompressor*, Writer*, uint32, uint32) [with Writer = SnappyScatteredWriter; uint32 = unsigned int]’ 991 | decompressor->DecompressAllTags(writer); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ snappy/snappy.cc:1657:37: required from here 1657 | return InternalUncompressAllTags(&decompressor, &writer, compressed_len, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1658 | uncompressed_len); | ~~~~~~~~~~~~~~~~~ snappy/snappy.cc:1511:41: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 1511 | if (SNAPPY_PREDICT_TRUE(offset - 1u < op_ptr_ - op_base_ && | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ snappy/snappy-stubs-internal.h:104:32: note: in definition of macro ‘SNAPPY_PREDICT_TRUE’ 104 | #define SNAPPY_PREDICT_TRUE(x) x | ^ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c snappy/snappy-sinksource.cc -o snappy/snappy-sinksource.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c miniz/miniz.cpp -o miniz/miniz.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c zstd/common/entropy_common.cpp -o zstd/common/entropy_common.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c zstd/common/error_private.cpp -o zstd/common/error_private.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c zstd/common/fse_decompress.cpp -o zstd/common/fse_decompress.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c zstd/common/xxhash.cpp -o zstd/common/xxhash.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c zstd/common/zstd_common.cpp -o zstd/common/zstd_common.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c zstd/decompress/huf_decompress.cpp -o zstd/decompress/huf_decompress.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c zstd/decompress/zstd_ddict.cpp -o zstd/decompress/zstd_ddict.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c zstd/decompress/zstd_decompress.cpp -o zstd/decompress/zstd_decompress.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c zstd/decompress/zstd_decompress_block.cpp -o zstd/decompress/zstd_decompress_block.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c zstd/compress/fse_compress.cpp -o zstd/compress/fse_compress.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c zstd/compress/hist.cpp -o zstd/compress/hist.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c zstd/compress/huf_compress.cpp -o zstd/compress/huf_compress.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c zstd/compress/zstd_compress.cpp -o zstd/compress/zstd_compress.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c zstd/compress/zstd_compress_literals.cpp -o zstd/compress/zstd_compress_literals.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c zstd/compress/zstd_compress_sequences.cpp -o zstd/compress/zstd_compress_sequences.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c zstd/compress/zstd_compress_superblock.cpp -o zstd/compress/zstd_compress_superblock.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c zstd/compress/zstd_double_fast.cpp -o zstd/compress/zstd_double_fast.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c zstd/compress/zstd_fast.cpp -o zstd/compress/zstd_fast.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c zstd/compress/zstd_lazy.cpp -o zstd/compress/zstd_lazy.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c zstd/compress/zstd_ldm.cpp -o zstd/compress/zstd_ldm.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -Ithrift -I. -Izstd/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c zstd/compress/zstd_opt.cpp -o zstd/compress/zstd_opt.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o nanoparquet.so rwrapper.o protect.o read.o write.o read-metadata.o read-pages.o arrow-schema.o base64.o r-base64.o snappy.o encodings.o dictionary-encoding.o test.o lib/ParquetFile.o lib/ParquetOutFile.o lib/RleBpDecoder.o parquet/parquet_types.o thrift/protocol/TProtocol.o thrift/transport/TTransportException.o thrift/transport/TBufferTransports.o fastpforlib/bitpacking.o snappy/snappy.o snappy/snappy-sinksource.o miniz/miniz.o zstd/common/entropy_common.o zstd/common/error_private.o zstd/common/fse_decompress.o zstd/common/xxhash.o zstd/common/zstd_common.o zstd/decompress/huf_decompress.o zstd/decompress/zstd_ddict.o zstd/decompress/zstd_decompress.o zstd/decompress/zstd_decompress_block.o zstd/compress/fse_compress.o zstd/compress/hist.o zstd/compress/huf_compress.o zstd/compress/zstd_compress.o zstd/compress/zstd_compress_literals.o zstd/compress/zstd_compress_sequences.o zstd/compress/zstd_compress_superblock.o zstd/compress/zstd_double_fast.o zstd/compress/zstd_fast.o zstd/compress/zstd_lazy.o zstd/compress/zstd_ldm.o zstd/compress/zstd_opt.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmppTz9fW/R.INSTALL2a1527605f0493/nanoparquet/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-nanoparquet/00new/nanoparquet ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nanoparquet) * installing *source* package ‘geometa’ ... ** package ‘geometa’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading in method for ‘coerce’ with signature ‘"emld","ISOMetadata"’: no definition for class “ISOMetadata” in method for ‘coerce’ with signature ‘"ncdf4","ISOMetadata"’: no definition for class “ISOMetadata” in method for ‘coerce’ with signature ‘"ncdf4","ISOImageryMetadata"’: no definition for class “ISOImageryMetadata” in method for ‘coerce’ with signature ‘"ISOMetadata","emld"’: no definition for class “ISOMetadata” ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (geometa) * installing *source* package ‘gdalcubes’ ... ** package ‘gdalcubes’ successfully unpacked and MD5 sums checked ** using staged installation configure: CC: gcc-14 configure: CXX: g++-14 -std=gnu++11 checking for gdal-config... /usr/bin/gdal-config checking gdal-config usability... yes configure: GDAL: 3.9.3 checking GDAL version >= 2.0.1... yes checking GDAL version != 3.6.0... yes checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++-14 -std=gnu++11 accepts -g... yes checking for g++-14 -std=gnu++11 option to enable C++11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for gdal.h... yes checking GDAL: linking with --libs only... yes checking GDAL: /usr/share/gdal/pcs.csv readable... no checking GDAL: checking whether PROJ is available for linking:... yes checking GDAL: checking whether PROJ is available fur running:... yes configure: GDAL: 3.9.3 configure: pkg-config proj exists, will use it configure: using proj.h. configure: PROJ: 9.5.1 checking PROJ: checking whether PROJ and sqlite3 are available for linking:... yes checking for nc-config... yes netcdf.m4: about to set rpath, here is source string: >-L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf< netcdf.m4: final rpath: -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial Netcdf library version: netCDF 4.9.2 Netcdf library has version 4 interface present: yes Netcdf library was compiled with C compiler: /usr/bin/cc configure: Package CPP flags: -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM configure: Package LIBS: -L/usr/lib/x86_64-linux-gnu -lgdal -lproj -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -Wl,-O1 configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpVKgVoh/R.INSTALL2a058038d0cb1d/gdalcubes/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/aggregate_time.cpp -o gdalcubes/src/aggregate_time.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/aggregate_space.cpp -o gdalcubes/src/aggregate_space.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/apply_pixel.cpp -o gdalcubes/src/apply_pixel.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/config.cpp -o gdalcubes/src/config.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/collection_format.cpp -o gdalcubes/src/collection_format.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/crop.cpp -o gdalcubes/src/crop.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/datetime.cpp -o gdalcubes/src/datetime.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/filesystem.cpp -o gdalcubes/src/filesystem.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/utils.cpp -o gdalcubes/src/utils.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/cube.cpp -o gdalcubes/src/cube.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/cube_factory.cpp -o gdalcubes/src/cube_factory.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/error.cpp -o gdalcubes/src/error.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/extract_geom.cpp -o gdalcubes/src/extract_geom.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/image_collection.cpp -o gdalcubes/src/image_collection.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/image_collection_cube.cpp -o gdalcubes/src/image_collection_cube.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/image_collection_ops.cpp -o gdalcubes/src/image_collection_ops.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/join_bands.cpp -o gdalcubes/src/join_bands.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/ncdf_cube.cpp -o gdalcubes/src/ncdf_cube.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/select_time.cpp -o gdalcubes/src/select_time.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/reduce_time.cpp -o gdalcubes/src/reduce_time.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/reduce_space.cpp -o gdalcubes/src/reduce_space.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/window_space.cpp -o gdalcubes/src/window_space.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/window_time.cpp -o gdalcubes/src/window_time.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/select_bands.cpp -o gdalcubes/src/select_bands.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/slice_time.cpp -o gdalcubes/src/slice_time.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/slice_space.cpp -o gdalcubes/src/slice_space.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/filter_pixel.cpp -o gdalcubes/src/filter_pixel.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/filter_geom.cpp -o gdalcubes/src/filter_geom.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/fill_time.cpp -o gdalcubes/src/fill_time.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/rename_bands.cpp -o gdalcubes/src/rename_bands.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/simple_cube.cpp -o gdalcubes/src/simple_cube.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/stream.cpp -o gdalcubes/src/stream.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/stream_reduce_time.cpp -o gdalcubes/src/stream_reduce_time.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/stream_reduce_space.cpp -o gdalcubes/src/stream_reduce_space.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/stream_apply_pixel.cpp -o gdalcubes/src/stream_apply_pixel.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/stream_apply_time.cpp -o gdalcubes/src/stream_apply_time.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/view.cpp -o gdalcubes/src/view.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/dummy.cpp -o gdalcubes/src/dummy.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/warp.cpp -o gdalcubes/src/warp.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gdalcubes/src/external/tinyexpr/tinyexpr.c -o gdalcubes/src/external/tinyexpr/tinyexpr.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/external/tiny-process-library/process.cpp -o gdalcubes/src/external/tiny-process-library/process.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/external/tiny-process-library/process_unix.cpp -o gdalcubes/src/external/tiny-process-library/process_unix.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes/src/external/json11/json11.cpp -o gdalcubes/src/external/json11/json11.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c multiprocess.cpp -o multiprocess.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c error.cpp -o error.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c gdalcubes.cpp -o gdalcubes.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -I/usr/include/webp -isystem /usr/include/mit-krb5 -I/usr/include/p11-kit-1 -DHAVE_PROJ_H -I/usr/include/gdal -I/usr/include -I/usr/include/hdf5/serial -DR_PACKAGE -DGDALCUBES_NO_SWARM -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o gdalcubes.so gdalcubes/src/aggregate_time.o gdalcubes/src/aggregate_space.o gdalcubes/src/apply_pixel.o gdalcubes/src/config.o gdalcubes/src/collection_format.o gdalcubes/src/crop.o gdalcubes/src/datetime.o gdalcubes/src/filesystem.o gdalcubes/src/utils.o gdalcubes/src/cube.o gdalcubes/src/cube_factory.o gdalcubes/src/error.o gdalcubes/src/extract_geom.o gdalcubes/src/image_collection.o gdalcubes/src/image_collection_cube.o gdalcubes/src/image_collection_ops.o gdalcubes/src/join_bands.o gdalcubes/src/ncdf_cube.o gdalcubes/src/select_time.o gdalcubes/src/reduce_time.o gdalcubes/src/reduce_space.o gdalcubes/src/window_space.o gdalcubes/src/window_time.o gdalcubes/src/select_bands.o gdalcubes/src/slice_time.o gdalcubes/src/slice_space.o gdalcubes/src/filter_pixel.o gdalcubes/src/filter_geom.o gdalcubes/src/fill_time.o gdalcubes/src/rename_bands.o gdalcubes/src/simple_cube.o gdalcubes/src/stream.o gdalcubes/src/stream_reduce_time.o gdalcubes/src/stream_reduce_space.o gdalcubes/src/stream_apply_pixel.o gdalcubes/src/stream_apply_time.o gdalcubes/src/view.o gdalcubes/src/dummy.o gdalcubes/src/warp.o gdalcubes/src/external/tinyexpr/tinyexpr.o gdalcubes/src/external/tiny-process-library/process.o gdalcubes/src/external/tiny-process-library/process_unix.o gdalcubes/src/external/json11/json11.o multiprocess.o error.o gdalcubes.o RcppExports.o -L/usr/lib/x86_64-linux-gnu -lgdal -lproj -Wl,-rpath,/usr/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -Wl,-O1 -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpVKgVoh/R.INSTALL2a058038d0cb1d/gdalcubes/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-gdalcubes/00new/gdalcubes/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gdalcubes) checking openssl_2.3.0.tar.gz ... checking adobeanalyticsr_0.4.0.tar.gz ... checking aphid_1.3.5.tar.gz ... checking AzureContainers_1.3.2.tar.gz ... checking AzureAuth_1.3.3.tar.gz ... checking AzureCosmosR_1.0.0.tar.gz ... checking AzureGraph_1.3.4.tar.gz ... checking AzureKeyVault_1.0.5.tar.gz ... checking AzureKusto_1.1.3.tar.gz ... checking AzureQstor_1.0.1.tar.gz ... checking AzureStor_3.7.0.tar.gz ... checking AzureTableStor_1.0.0.tar.gz ... checking AzureVMmetadata_1.0.1.tar.gz ... checking base64_2.0.2.tar.gz ... checking bcrypt_1.2.0.tar.gz ... checking charlesschwabapi_1.0.4.tar.gz ... checking cjar_0.1.2.tar.gz ... checking contentid_0.0.18.tar.gz ... checking cookiemonster_0.0.3.tar.gz ... checking credentials_2.0.2.tar.gz ... checking cryptotrackr_1.3.3.tar.gz ... checking cyphr_1.1.4.tar.gz ... checking D4TAlink.light_2.1.17.tar.gz ... checking dclust_0.1.0.tar.gz ... checking deident_1.0.0.tar.gz ... checking distill_1.6.tar.gz ... checking earthdatalogin_0.0.2.tar.gz ... checking encryptr_0.1.3.tar.gz ... checking httr2_1.0.7.tar.gz ... checking ids_1.0.1.tar.gz ... checking keyToEnglish_0.2.1.tar.gz ... checking metricminer_0.5.1.tar.gz ... checking GWalkR_0.2.0.tar.gz ... checking ghapps_1.1.1.tar.gz ... checking keyring_1.3.2.tar.gz ... checking geonapi_0.7-2.tar.gz ... checking mstrio_11.3.5.101.tar.gz ... checking firebase_1.0.2.tar.gz ... checking geosapi_0.7-1.tar.gz ... checking ocs4R_0.2-3.tar.gz ... checking jose_1.2.1.tar.gz ... checking gargle_1.5.2.tar.gz ... checking geonode4R_0.1-1.tar.gz ... checking KoboconnectR_2.0.0.tar.gz ... checking googleCloudStorageR_0.7.0.tar.gz ... checking secret_1.1.0.tar.gz ... checking mongolite_2.8.2.tar.gz ... checking kmer_1.1.2.tar.gz ... checking RKEEL_1.3.4.tar.gz ... checking rbtc_0.1-7.tar.gz ... checking insee_1.1.7.tar.gz ... checking insect_1.4.2.tar.gz ... checking sched_1.0.3.tar.gz ... checking ExPanDaR_0.5.3.tar.gz ... checking reconstructr_2.0.4.tar.gz ... checking SCDB_0.4.1.tar.gz ... checking gert_2.1.4.tar.gz ... checking voson.tcn_0.5.0.tar.gz ... checking epidatr_1.2.0.tar.gz ... checking pkgdown_2.1.1.tar.gz ... checking otp_0.1.1.tar.gz ... checking umap_0.2.10.0.tar.gz ... checking rDataPipeline_0.60.0.tar.gz ... checking sparklyr_1.8.6.tar.gz ... checking shinydbauth_1.0.0.1.tar.gz ... checking OlinkAnalyze_4.0.2.tar.gz ... checking boxr_0.3.6.tar.gz ... checking mlflow_2.18.0.tar.gz ... checking SensusR_2.3.1.tar.gz ... checking rbch_0.1-2.tar.gz ... checking pins_1.4.0.tar.gz ... checking lazytrade_0.5.4.tar.gz ... checking fanyi_0.0.7.tar.gz ... checking ottrpal_1.2.1.tar.gz ... checking RPresto_1.4.6.tar.gz ... checking RBaseX_1.1.2.tar.gz ... checking telegram.bot_3.0.0.tar.gz ... checking neonstore_0.5.1.tar.gz ... checking sship_0.9.0.tar.gz ... checking officer_0.6.7.tar.gz ... checking pcutils_0.2.7.tar.gz ... checking httr_1.4.7.tar.gz ... checking opencpu_2.2.14.tar.gz ... checking OPI_3.0.2.tar.gz ... checking shinymanager_1.0.410.tar.gz ... checking circle_0.7.3.tar.gz ... checking Microsoft365R_2.4.0.tar.gz ... checking wilson_2.4.2.tar.gz ... checking rgoogleclassroom_0.9.1.tar.gz ... checking solvebio_2.15.0.tar.gz ... checking base64url_1.4.tar.gz ... checking rglobi_0.3.4.tar.gz ... checking ricu_0.5.6.tar.gz ... checking yulab.utils_0.1.8.tar.gz ... checking dataone_2.2.2.tar.gz ... checking ows4R_0.4.tar.gz ... checking rsconnect_1.3.3.tar.gz ... checking wikkitidy_0.1.13.tar.gz ... checking stevedore_0.9.6.tar.gz ... checking RTD_0.4.1.tar.gz ... checking rtweet_2.0.0.tar.gz ... checking databraryr_0.6.6.tar.gz ... Depends: Package: openssl Imports: askpass Timings: user system elapsed openssl 57.693 7.255 67.891 Results: Check status summary: ERROR NOTE OK Source packages 0 0 1 Reverse depends 1 30 70 Check results summary: openssl ... OK rdepends_adobeanalyticsr ... OK rdepends_aphid ... NOTE * checking C++ specification ... NOTE rdepends_AzureAuth ... OK rdepends_AzureContainers ... NOTE * checking Rd cross-references ... NOTE rdepends_AzureCosmosR ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_AzureGraph ... NOTE * checking Rd cross-references ... NOTE rdepends_AzureKeyVault ... NOTE * checking Rd cross-references ... NOTE rdepends_AzureKusto ... NOTE * checking Rd cross-references ... NOTE rdepends_AzureQstor ... NOTE * checking Rd cross-references ... NOTE rdepends_AzureStor ... NOTE * checking Rd cross-references ... NOTE rdepends_AzureTableStor ... OK rdepends_AzureVMmetadata ... OK rdepends_base64 ... OK rdepends_base64url ... OK rdepends_bcrypt ... OK rdepends_boxr ... NOTE * checking Rd cross-references ... NOTE rdepends_charlesschwabapi ... OK rdepends_circle ... OK rdepends_cjar ... OK rdepends_contentid ... OK rdepends_cookiemonster ... OK rdepends_credentials ... OK rdepends_cryptotrackr ... OK rdepends_cyphr ... OK rdepends_D4TAlink.light ... OK rdepends_databraryr ... OK rdepends_dataone ... NOTE * checking Rd files ... [1s/1s] NOTE * checking Rd cross-references ... NOTE rdepends_dclust ... OK rdepends_deident ... OK rdepends_distill ... OK rdepends_earthdatalogin ... OK rdepends_encryptr ... NOTE * checking Rd cross-references ... NOTE * checking for non-standard things in the check directory ... NOTE rdepends_epidatr ... OK rdepends_ExPanDaR ... OK rdepends_fanyi ... OK rdepends_firebase ... OK rdepends_gargle ... NOTE * checking Rd cross-references ... NOTE rdepends_geonapi ... NOTE * checking Rd cross-references ... NOTE rdepends_geonode4R ... NOTE * checking Rd cross-references ... NOTE rdepends_geosapi ... NOTE * checking Rd cross-references ... NOTE rdepends_gert ... OK rdepends_ghapps ... OK rdepends_googleCloudStorageR ... OK rdepends_GWalkR ... OK rdepends_httr ... OK rdepends_httr2 ... OK rdepends_ids ... OK rdepends_insect ... NOTE * checking Rd cross-references ... NOTE rdepends_insee ... OK rdepends_jose ... OK rdepends_keyring ... OK rdepends_keyToEnglish ... NOTE * checking package subdirectories ... NOTE rdepends_kmer ... NOTE * checking C++ specification ... NOTE rdepends_KoboconnectR ... OK rdepends_lazytrade ... OK rdepends_metricminer ... NOTE * checking Rd cross-references ... NOTE rdepends_Microsoft365R ... NOTE * checking Rd cross-references ... NOTE rdepends_mlflow ... OK rdepends_mongolite ... OK rdepends_mstrio ... OK rdepends_neonstore ... OK rdepends_ocs4R ... NOTE * checking Rd files ... [0s/0s] NOTE * checking Rd cross-references ... NOTE rdepends_officer ... OK rdepends_OlinkAnalyze ... OK rdepends_opencpu ... OK rdepends_OPI ... OK rdepends_otp ... OK rdepends_ottrpal ... NOTE * checking Rd cross-references ... NOTE rdepends_ows4R ... OK rdepends_pcutils ... OK rdepends_pins ... OK rdepends_pkgdown ... ERROR * checking tests ... [147s/80s] ERROR rdepends_RBaseX ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_rbch ... OK rdepends_rbtc ... OK rdepends_rDataPipeline ... OK rdepends_reconstructr ... OK rdepends_rglobi ... OK rdepends_rgoogleclassroom ... NOTE * checking Rd cross-references ... NOTE rdepends_ricu ... NOTE * checking Rd cross-references ... NOTE rdepends_RKEEL ... OK rdepends_RPresto ... NOTE * checking Rd cross-references ... NOTE rdepends_rsconnect ... OK rdepends_RTD ... OK rdepends_rtweet ... OK rdepends_SCDB ... OK rdepends_sched ... OK rdepends_secret ... OK rdepends_SensusR ... NOTE * checking Rd cross-references ... NOTE rdepends_shinydbauth ... OK rdepends_shinymanager ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_solvebio ... OK rdepends_sparklyr ... OK rdepends_sship ... OK rdepends_stevedore ... NOTE * checking Rd files ... [1s/1s] NOTE rdepends_telegram.bot ... NOTE * checking Rd files ... [1s/1s] NOTE * checking Rd cross-references ... NOTE rdepends_umap ... OK rdepends_voson.tcn ... OK rdepends_wikkitidy ... OK rdepends_wilson ... OK rdepends_yulab.utils ... OK