* using log directory ‘/srv/hornik/tmp/CRAN/openEBGM.Rcheck’
* using R Under development (unstable) (2023-09-11 r85126)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 16.0.6 (11)
    GNU Fortran (Debian 13.2.0-2) 13.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘openEBGM/DESCRIPTION’ ... OK
* this is package ‘openEBGM’ version ‘0.9.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/5s] Note_to_CRAN_maintainers
Maintainer: ‘John Ihrie <John.Ihrie@fda.hhs.gov>’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘openEBGM’ can be installed ... [3s/3s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [6s/6s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [60s/9s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
ebScores         6.148  0.112   1.225
quantBisect      6.115  0.099   1.222
summary.openEBGM 5.988  0.129   1.239
hyperEM          5.685  0.120   0.985
Qn               5.416  0.115   0.568
ebgm             5.254  0.124   0.525
autoHyper        5.229  0.132   0.513
exploreHypers    5.163  0.115   0.505
Examples with CPU time > 2.5 times elapsed time
                  user system elapsed  ratio
negLLsquash      4.735  0.141   0.318 15.333
autoSquash       4.013  0.187   0.276 15.217
exploreHypers    5.163  0.115   0.505 10.451
autoHyper        5.229  0.132   0.513 10.450
ebgm             5.254  0.124   0.525 10.244
Qn               5.416  0.115   0.568  9.738
hyperEM          5.685  0.120   0.985  5.893
ebScores         6.148  0.112   1.225  5.110
quantBisect      6.115  0.099   1.222  5.085
summary.openEBGM 5.988  0.129   1.239  4.937
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [51s/16s] NOTE
  Running ‘testthat.R’ [51s/16s]
Running R code in ‘testthat.R’ had CPU time 3.1 times elapsed time
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [73s/47s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 NOTEs