R Under development (unstable) (2023-12-20 r85711 ucrt) -- "Unsuffered Consequences" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(ontophylo) > > test_check("ontophylo") [ FAIL 0 | WARN 0 | SKIP 24 | PASS 58 ] ══ Skipped tests (24) ══════════════════════════════════════════════════════════ • Skipped. This is just an internal wrapper function. (3): 'test_KDE_unnorm_trunc_Markov.R:5:5', 'test_KDE_unnormalized_scalar_Markov_kernel.R:5:5', 'test_join_edges.R:5:5' • This function cannot be appropriately unit tested in a reasonable amount of time. (14): 'test_MultiScale.simmap.R:5:5', 'test_add_noise_MD.R:5:5', 'test_derivative_KDE.R:5:5', 'test_edge_profiles4plotting.R:5:5', 'test_estimate_band_W.R:5:5', 'test_estimate_edge_KDE.R:5:5', 'test_estimate_edge_KDE_Markov_kernel_unnorm.R:5:5', 'test_integrate_edge_KDE.R:5:5', 'test_loess_smoothing_KDE.R:5:5', 'test_make_contMap_KDE.R:5:5', 'test_make_postPois_KDE.R:5:5', 'test_normalize_KDE.R:5:5', 'test_path_hamming_over_all_edges.R:5:5', 'test_path_hamming_over_trees_KDE.R:5:5' • This is a complex visualization function that cannot be appropriately unit tested. (4): 'test_anat_plot.R:4:5', 'test_edgeplot.R:4:5', 'test_make_pic.R:4:5', 'test_mds_plot.R:5:5' • This is a plotting function that cannot be appropriately unit tested. (1): 'test_color.bar.R:5:5' • This is just a simple function for reading a text file that cannot be appropriately unit tested. (1): 'test_Read_Simmap_Rev.R:4:5' • This is just a wrapper function. All dependent functions were already unit tested. (1): 'test_pNHPP.R:4:5' [ FAIL 0 | WARN 0 | SKIP 24 | PASS 58 ] > > proc.time() user system elapsed 3.25 0.35 3.61