downloading reverse dependencies ...
downloading SimReg_3.4.tar.gz ... ok

installing dependencies ‘ontologyPlot’, ‘ontologySimilarity’,
  ‘paintmap’

begin installing package ‘paintmap’
begin installing package ‘ontologySimilarity’
* installing *source* package ‘paintmap’ ...
** package ‘paintmap’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (paintmap)
begin installing package ‘ontologyPlot’
* installing *source* package ‘ontologyPlot’ ...
** package ‘ontologyPlot’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ontologyPlot)
* installing *source* package ‘ontologySimilarity’ ...
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpKrZDrg/R.INSTALL22a75cd39cea7/ontologySimilarity/src'
g++-13  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Interface.cpp -o Interface.o
g++-13  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c PVal.cpp -o PVal.o
g++-13  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Sampling.cpp -o Sampling.o
Sampling.cpp: In function ‘bool next_combination(Rcpp::IntegerVector, size_t, int)’:
Sampling.cpp:16:23: warning: comparison of integer expressions of different signedness: ‘Rcpp::traits::storage_type<13>::type’ {aka ‘int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   16 |         if (item[n-i] < N-i) {
g++-13  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c SimMatrix.cpp -o SimMatrix.o
g++-13  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c TermList.cpp -o TermList.o
g++-13  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c TermSetSimData.cpp -o TermSetSimData.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o ontologySimilarity.so Interface.o PVal.o RcppExports.o Sampling.o SimMatrix.o TermList.o TermSetSimData.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpKrZDrg/R.INSTALL22a75cd39cea7/ontologySimilarity/src'
installing to /home/hornik/tmp/CRAN/Library/00LOCK-ontologySimilarity/00new/ontologySimilarity/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ontologySimilarity)

checking ontologySimilarity_2.7.tar.gz ...
checking SimReg_3.4.tar.gz ...

Depends:
Package: ontologySimilarity
  Depends: R (>= 3.5.0)
  Imports: Rcpp (>= 1.0.0), ontologyIndex (>= 2.0)
  LinkingTo: Rcpp

Timings:
                      user system elapsed
ontologySimilarity 120.467  9.168 130.289

Results:
Check status summary:
                  OK
  Source packages  1
  Reverse depends  1

Check results summary:
ontologySimilarity ... OK
rdepends_SimReg ... OK