Package: arealDB
Check: R code for possible problems
New result: NOTE
  matchOntology: possible error in edit_matches(new =
    externalConcepts$label, target = externalConcepts %>%
    select(has_broader, class), source = dataseries, ontology = ontology,
    matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose,
    beep = beep): unused argument (target = externalConcepts %>%
    select(has_broader, class))

Package: arealDB
Check: tests
New result: ERROR
    Running ‘testthat.R’ [7s/7s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > library(testthat)
    > 
    > test_check("arealDB")
    Loading required package: arealDB
    
    
    
    
    
    
    
    
    
    
    [ FAIL 5 | WARN 0 | SKIP 4 | PASS 62 ]
    
    ══ Skipped tests (4) ═══════════════════════════════════════════════════════════
    • empty test (4): 'test_matchOntology.R:7:1', 'test_matchOntology.R:12:1',
      'test_matchOntology.R:17:1', 'test_matchOntology.R:22:1'
    
    ══ Failed tests ════════════════════════════════════════════════════════════════
    ── Error ('test_01_makeExampleDB.R:89:3'): make example DB until normGeometry ──
    Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>% 
        select(has_broader, class), source = dataseries, ontology = ontology, 
        matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose, 
        beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
    Backtrace:
        ▆
     1. └─arealDB::makeExampleDB(until = "normGeometry", path = dbpath) at test_01_makeExampleDB.R:89:3
     2.   └─arealDB::normGeometry(update = TRUE, verbose = verbose)
     3.     └─arealDB::matchOntology(...)
    ── Error ('test_01_makeExampleDB.R:99:3'): make example DB until normTable ─────
    Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>% 
        select(has_broader, class), source = dataseries, ontology = ontology, 
        matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose, 
        beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
    Backtrace:
        ▆
     1. └─arealDB::makeExampleDB(until = "normTable", path = dbpath) at test_01_makeExampleDB.R:99:3
     2.   └─arealDB::normGeometry(update = TRUE, verbose = verbose)
     3.     └─arealDB::matchOntology(...)
    ── Error ('test_06_normGeometry.R:16:3'): geometries can be normalised ─────────
    Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>% 
        select(has_broader, class), source = dataseries, ontology = ontology, 
        matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose, 
        beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
    Backtrace:
        ▆
     1. └─arealDB::normGeometry(...) at test_06_normGeometry.R:16:3
     2.   └─arealDB::matchOntology(...)
    ── Error ('test_07_normTable.R:13:3'): tables can be normalised (without matched variables) ──
    Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>% 
        select(has_broader, class), source = dataseries, ontology = ontology, 
        matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose, 
        beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
    Backtrace:
        ▆
     1. └─arealDB::makeExampleDB(until = "normGeometry", path = dbpath) at test_07_normTable.R:13:3
     2.   └─arealDB::normGeometry(update = TRUE, verbose = verbose)
     3.     └─arealDB::matchOntology(...)
    ── Error ('test_07_normTable.R:42:3'): tables can be normalised (with matched variables) ──
    Error in `edit_matches(new = externalConcepts$label, target = externalConcepts %>% 
        select(has_broader, class), source = dataseries, ontology = ontology, 
        matchDir = paste0(intPaths, "/meta/", type, "/"), verbose = verbose, 
        beep = beep)`: unused argument (target = externalConcepts %>% select(has_broader, class))
    Backtrace:
        ▆
     1. └─arealDB::makeExampleDB(until = "normGeometry", path = dbpath) at test_07_normTable.R:42:3
     2.   └─arealDB::normGeometry(update = TRUE, verbose = verbose)
     3.     └─arealDB::matchOntology(...)
    
    [ FAIL 5 | WARN 0 | SKIP 4 | PASS 62 ]
    Error: Test failures
    Execution halted

Package: arealDB
Check: whether package can be installed
New result: WARNING
  Found the following significant warnings:
    Note: possible error in 'edit_matches(new = externalConcepts$label, ': unused argument (target = externalConcepts %>% select(has_broader, class)) 
  See ‘/home/hornik/tmp/CRAN_recheck/arealDB.Rcheck/00install.out’ for details.
  Information on the location(s) of code generating the ‘Note’s can be
  obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
  to ‘yes’.