* using log directory 'd:/RCompile/CRANincoming/R-devel/oncmap.Rcheck'
* using R Under development (unstable) (2025-01-20 r87609 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'oncmap/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'oncmap' version '0.1.5'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Michal Kouril <Michal.Kouril@cchmc.org>'

New submission

Possibly misspelled words in DESCRIPTION:
  EAMD (20:62, 22:60)
  EAMDs (18:89)
  OncMAP (22:36)
  actuations (22:65)
  csv (22:98)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'oncmap' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [22s] ERROR
  Running 'testthat.R' [22s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  > library(oncmap)
  > 
  > test_check("oncmap")
  New names:
  * `` -> `...2`
  New names:
  * `` -> `...2`
  New names:
  * `` -> `...2`
  [ FAIL 8 | WARN 0 | SKIP 0 | PASS 27 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-process_eamd-script.R:3:3'): process_eamd processing ─────────
  round(process_eamd(input_file)$adh, 4) (`actual`) not equal to data.frame(...) (`expected`).
  
  actual vs expected
                  daysadh daysdose perdoses  n
  - actual[1, ]    0.5652   0.6957   0.8261 23
  + expected[1, ]  0.5833   0.7083   0.8333 24
  
    `actual$daysadh`: 0.565
  `expected$daysadh`: 0.583
  
    `actual$daysdose`: 0.696
  `expected$daysdose`: 0.708
  
    `actual$perdoses`: 0.8261
  `expected$perdoses`: 0.8333
  
    `actual$n`: 23.0
  `expected$n`: 24.0
  ── Failure ('test-process_eamd-script.R:11:3'): process_eamd processing ────────
  round(...) (`actual`) not equal to data.frame(...) (`expected`).
  
  actual vs expected
                  daysadh daysdose perdoses  n
  - actual[1, ]    0.2174   0.7391   1.3571 23
  + expected[1, ]  0.2083   0.7083   1.2500 24
  
    `actual$daysadh`: 0.2174
  `expected$daysadh`: 0.2083
  
    `actual$daysdose`: 0.739
  `expected$daysdose`: 0.708
  
    `actual$perdoses`: 1.36
  `expected$perdoses`: 1.25
  
    `actual$n`: 23.0
  `expected$n`: 24.0
  ── Failure ('test-process_eamd-script.R:19:3'): process_eamd processing ────────
  round(report$adh, 4) (`actual`) not equal to data.frame(daysadh = 0.6, daysdose = 0.7, perdoses = 0.8, n = 20) (`expected`).
  
  actual vs expected
                  daysadh daysdose perdoses  n
  - actual[1, ]    0.5789   0.6842   0.7895 19
  + expected[1, ]  0.6000   0.7000   0.8000 20
  
    `actual$daysadh`: 0.579
  `expected$daysadh`: 0.600
  
    `actual$daysdose`: 0.684
  `expected$daysdose`: 0.700
  
    `actual$perdoses`: 0.789
  `expected$perdoses`: 0.800
  
    `actual$n`: 19.0
  `expected$n`: 20.0
  ── Failure ('test-process_eamd.R:5:3'): process_eamd processing ────────────────
  round(process_eamd("test_ecap2.xls")$adh, 4) (`actual`) not equal to data.frame(...) (`expected`).
  
  actual vs expected
                  daysadh daysdose perdoses   n
  - actual[1, ]    0.0482   0.0799   0.1116 726
  + expected[1, ]  0.0495   0.0812   0.1128 727
  
    `actual$daysadh`: 0.0482
  `expected$daysadh`: 0.0495
  
    `actual$daysdose`: 0.0799
  `expected$daysdose`: 0.0812
  
    `actual$perdoses`: 0.1116
  `expected$perdoses`: 0.1128
  
    `actual$n`: 726.0
  `expected$n`: 727.0
  ── Failure ('test-process_eamd.R:6:3'): process_eamd processing ────────────────
  round(...) (`actual`) not equal to data.frame(...) (`expected`).
  
  actual vs expected
                  daysadh daysdose perdoses   n
  - actual[1, ]    0.0482   0.0799   0.1116 726
  + expected[1, ]  0.0495   0.0812   0.1128 727
  
    `actual$daysadh`: 0.0482
  `expected$daysadh`: 0.0495
  
    `actual$daysdose`: 0.0799
  `expected$daysdose`: 0.0812
  
    `actual$perdoses`: 0.1116
  `expected$perdoses`: 0.1128
  
    `actual$n`: 726.0
  `expected$n`: 727.0
  ── Failure ('test-process_eamd.R:7:3'): process_eamd processing ────────────────
  round(...) (`actual`) not equal to data.frame(...) (`expected`).
  
  actual vs expected
                  daysadh daysdose perdoses   n
  - actual[1, ]    0.0482   0.0799   0.1116 726
  + expected[1, ]  0.0495   0.0812   0.1128 727
  
    `actual$daysadh`: 0.0482
  `expected$daysadh`: 0.0495
  
    `actual$daysdose`: 0.0799
  `expected$daysdose`: 0.0812
  
    `actual$perdoses`: 0.1116
  `expected$perdoses`: 0.1128
  
    `actual$n`: 726.0
  `expected$n`: 727.0
  ── Failure ('test-process_eamd.R:8:3'): process_eamd processing ────────────────
  round(...) (`actual`) not equal to data.frame(...) (`expected`).
  
  actual vs expected
                  daysadh daysdose perdoses   n
  - actual[1, ]    0.0482   0.0799   0.1116 726
  + expected[1, ]  0.0495   0.0812   0.1128 727
  
    `actual$daysadh`: 0.0482
  `expected$daysadh`: 0.0495
  
    `actual$daysdose`: 0.0799
  `expected$daysdose`: 0.0812
  
    `actual$perdoses`: 0.1116
  `expected$perdoses`: 0.1128
  
    `actual$n`: 726.0
  `expected$n`: 727.0
  ── Failure ('test-process_eamd.R:9:3'): process_eamd processing ────────────────
  round(...) (`actual`) not equal to data.frame(...) (`expected`).
  
  actual vs expected
                  daysadh daysdose perdoses   n
  - actual[1, ]    0.0482   0.0799   0.1116 726
  + expected[1, ]  0.0495   0.0812   0.1128 727
  
    `actual$daysadh`: 0.0482
  `expected$daysadh`: 0.0495
  
    `actual$daysdose`: 0.0799
  `expected$daysdose`: 0.0812
  
    `actual$perdoses`: 0.1116
  `expected$perdoses`: 0.1128
  
    `actual$n`: 726.0
  `expected$n`: 727.0
  
  [ FAIL 8 | WARN 0 | SKIP 0 | PASS 27 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... [22s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR, 1 NOTE