# Unit tests for VocabulariesResource (R/vocabularies.R) # Uses mocked HTTP responses to avoid API calls # ============================================================================== # VocabulariesResource initialization # ============================================================================== test_that("VocabulariesResource initializes correctly", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- VocabulariesResource$new(base_req) expect_s3_class(resource, "VocabulariesResource") expect_s3_class(resource, "R6") }) test_that("VocabulariesResource print method works", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- VocabulariesResource$new(base_req) expect_output(print(resource), "") expect_output(print(resource), "list, get, stats") }) # ============================================================================== # list() method # ============================================================================== test_that("vocabularies$list calls correct endpoint", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- VocabulariesResource$new(base_req) called_with <- NULL local_mocked_bindings( perform_get = function(req, path, query = NULL) { called_with <<- list(path = path, query = query) list(vocabularies = list()) } ) resource$list() expect_equal(called_with$path, "vocabularies") expect_equal(called_with$query$sort_by, "name") expect_equal(called_with$query$sort_order, "asc") }) test_that("vocabularies$list includes optional params", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- VocabulariesResource$new(base_req) called_with <- NULL local_mocked_bindings( perform_get = function(req, path, query = NULL) { called_with <<- list(query = query) list(vocabularies = list()) } ) resource$list( include_stats = TRUE, include_inactive = TRUE, sort_by = "priority", sort_order = "desc", page = 2, page_size = 50 ) expect_equal(called_with$query$include_stats, "true") expect_equal(called_with$query$include_inactive, "true") expect_equal(called_with$query$sort_by, "priority") expect_equal(called_with$query$sort_order, "desc") expect_equal(called_with$query$page, 2L) expect_equal(called_with$query$page_size, 50L) }) # ============================================================================== # get() method # ============================================================================== test_that("vocabularies$get validates vocabulary_id", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- VocabulariesResource$new(base_req) expect_error(resource$get("")) expect_error(resource$get(123)) }) test_that("vocabularies$get calls correct endpoint", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- VocabulariesResource$new(base_req) called_with <- NULL local_mocked_bindings( perform_get = function(req, path, query = NULL) { called_with <<- list(path = path, query = query) mock_vocabulary() } ) resource$get("SNOMED") expect_equal(called_with$path, "vocabularies/SNOMED") expect_null(called_with$query) }) test_that("vocabularies$get only accepts vocabulary_id", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- VocabulariesResource$new(base_req) called_with <- NULL local_mocked_bindings( perform_get = function(req, path, query = NULL) { called_with <<- list(path = path, query = query) mock_vocabulary() } ) resource$get("SNOMED") expect_equal(called_with$path, "vocabularies/SNOMED") expect_null(called_with$query) }) # ============================================================================== # stats() method # ============================================================================== test_that("vocabularies$stats validates vocabulary_id", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- VocabulariesResource$new(base_req) expect_error(resource$stats("")) }) test_that("vocabularies$stats calls correct endpoint", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- VocabulariesResource$new(base_req) called_with <- NULL local_mocked_bindings( perform_get = function(req, path, query = NULL) { called_with <<- list(path = path) list(total_concepts = 1000) } ) resource$stats("SNOMED") expect_equal(called_with$path, "vocabularies/SNOMED/stats") }) # ============================================================================== # domains() method # ============================================================================== test_that("vocabularies$domains calls correct endpoint", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- VocabulariesResource$new(base_req) called_with <- NULL local_mocked_bindings( perform_get = function(req, path, query = NULL) { called_with <<- list(path = path, query = query) list(domains = list()) } ) resource$domains() expect_equal(called_with$path, "vocabularies/domains") expect_null(called_with$query) }) # ============================================================================== # concepts() method # ============================================================================== test_that("vocabularies$concepts validates vocabulary_id", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- VocabulariesResource$new(base_req) expect_error(resource$concepts("")) }) test_that("vocabularies$concepts calls correct endpoint", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- VocabulariesResource$new(base_req) called_with <- NULL local_mocked_bindings( perform_get = function(req, path, query = NULL) { called_with <<- list(path = path, query = query) list(concepts = list()) } ) resource$concepts("SNOMED", page = 1, page_size = 20) expect_equal(called_with$path, "vocabularies/SNOMED/concepts") expect_equal(called_with$query$page, 1L) expect_equal(called_with$query$page_size, 20L) expect_equal(called_with$query$standard_concept, "all") expect_equal(called_with$query$sort_by, "name") expect_equal(called_with$query$sort_order, "asc") }) test_that("vocabularies$concepts includes optional filters", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- VocabulariesResource$new(base_req) called_with <- NULL local_mocked_bindings( perform_get = function(req, path, query = NULL) { called_with <<- list(query = query) list(concepts = list()) } ) resource$concepts( "SNOMED", search = "diabetes", standard_concept = "S", include_invalid = TRUE, include_relationships = TRUE, include_synonyms = TRUE, sort_by = "concept_id", sort_order = "desc" ) expect_equal(called_with$query$search, "diabetes") expect_equal(called_with$query$standard_concept, "S") expect_equal(called_with$query$include_invalid, "true") expect_equal(called_with$query$include_relationships, "true") expect_equal(called_with$query$include_synonyms, "true") expect_equal(called_with$query$sort_by, "concept_id") expect_equal(called_with$query$sort_order, "desc") })