# Unit tests for ConceptsResource (R/concepts.R) # Uses mocked HTTP responses to avoid API calls # ============================================================================== # ConceptsResource initialization # ============================================================================== test_that("ConceptsResource initializes correctly", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- ConceptsResource$new(base_req) expect_s3_class(resource, "ConceptsResource") expect_s3_class(resource, "R6") }) test_that("ConceptsResource print method works", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- ConceptsResource$new(base_req) expect_output(print(resource), "") expect_output(print(resource), "get, get_by_code, batch") }) # ============================================================================== # get() method # ============================================================================== test_that("concepts$get validates concept_id", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- ConceptsResource$new(base_req) expect_error(resource$get("not_a_number"), class = "omophub_validation_error") expect_error(resource$get(-1), class = "omophub_validation_error") expect_error(resource$get(0), class = "omophub_validation_error") }) test_that("concepts$get calls correct endpoint", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- ConceptsResource$new(base_req) # Mock the perform_get function called_with <- NULL local_mocked_bindings( perform_get = function(req, path, query = NULL) { called_with <<- list(path = path, query = query) mock_concept() } ) resource$get(201826) expect_equal(called_with$path, "concepts/201826") expect_null(called_with$query) }) test_that("concepts$get adds query params for options", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- ConceptsResource$new(base_req) called_with <- NULL local_mocked_bindings( perform_get = function(req, path, query = NULL) { called_with <<- list(path = path, query = query) mock_concept() } ) resource$get(201826, include_relationships = TRUE, include_synonyms = TRUE) expect_equal(called_with$query$include_relationships, "true") expect_equal(called_with$query$include_synonyms, "true") }) # ============================================================================== # get_by_code() method # ============================================================================== test_that("concepts$get_by_code validates arguments", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- ConceptsResource$new(base_req) expect_error(resource$get_by_code("", "12345")) expect_error(resource$get_by_code("SNOMED", "")) expect_error(resource$get_by_code(123, "12345")) }) test_that("concepts$get_by_code calls correct endpoint", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- ConceptsResource$new(base_req) called_with <- NULL local_mocked_bindings( perform_get = function(req, path, query = NULL) { called_with <<- list(path = path) mock_concept() } ) resource$get_by_code("SNOMED", "44054006") expect_equal(called_with$path, "concepts/by-code/SNOMED/44054006") }) # ============================================================================== # batch() method # ============================================================================== test_that("concepts$batch validates concept_ids", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- ConceptsResource$new(base_req) expect_error(resource$batch(c())) # Empty expect_error(resource$batch("not_numbers")) # Not integers }) test_that("concepts$batch calls correct endpoint with body", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- ConceptsResource$new(base_req) called_with <- NULL local_mocked_bindings( perform_post = function(req, path, body = NULL) { called_with <<- list(path = path, body = body) list(concepts = list(mock_concept())) } ) resource$batch(c(201826, 12345)) expect_equal(called_with$path, "concepts/batch") expect_equal(called_with$body$concept_ids, c(201826L, 12345L)) }) test_that("concepts$batch includes optional parameters", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- ConceptsResource$new(base_req) called_with <- NULL local_mocked_bindings( perform_post = function(req, path, body = NULL) { called_with <<- list(body = body) list(concepts = list()) } ) resource$batch( c(201826), include_relationships = TRUE, include_synonyms = TRUE, include_mappings = TRUE, vocabulary_filter = c("SNOMED", "ICD10CM"), standard_only = TRUE ) expect_true(called_with$body$include_relationships) expect_true(called_with$body$include_synonyms) expect_true(called_with$body$include_mappings) expect_equal(called_with$body$vocabulary_filter, c("SNOMED", "ICD10CM")) expect_true(called_with$body$standard_only) }) # ============================================================================== # suggest() method # ============================================================================== test_that("concepts$suggest validates query length", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- ConceptsResource$new(base_req) expect_error(resource$suggest("a")) # Too short expect_error(resource$suggest("")) }) test_that("concepts$suggest validates limit range", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- ConceptsResource$new(base_req) local_mocked_bindings( perform_get = function(req, path, query = NULL) list() ) expect_error(resource$suggest("diabetes", limit = 0)) expect_error(resource$suggest("diabetes", limit = 100)) }) test_that("concepts$suggest calls correct endpoint", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- ConceptsResource$new(base_req) called_with <- NULL local_mocked_bindings( perform_get = function(req, path, query = NULL) { called_with <<- list(path = path, query = query) list(suggestions = list()) } ) resource$suggest("diab", vocabulary_ids = "SNOMED", domain_ids = "Condition", page_size = 5) expect_equal(called_with$path, "concepts/suggest") expect_equal(called_with$query$query, "diab") expect_equal(called_with$query$page_size, 5L) expect_equal(called_with$query$vocabulary_ids, "SNOMED") expect_equal(called_with$query$domain_ids, "Condition") }) # ============================================================================== # related() method # ============================================================================== test_that("concepts$related validates concept_id", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- ConceptsResource$new(base_req) expect_error(resource$related("invalid")) }) test_that("concepts$related calls correct endpoint", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- ConceptsResource$new(base_req) called_with <- NULL local_mocked_bindings( perform_get = function(req, path, query = NULL) { called_with <<- list(path = path, query = query) list(related_concepts = list()) } ) resource$related(201826, page_size = 10) expect_equal(called_with$path, "concepts/201826/related") expect_equal(called_with$query$page_size, 10L) }) test_that("concepts$related includes optional filters", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- ConceptsResource$new(base_req) called_with <- NULL local_mocked_bindings( perform_get = function(req, path, query = NULL) { called_with <<- list(query = query) list() } ) resource$related( 201826, relationship_types = c("Is a", "Maps to"), min_score = 0.5, page_size = 50 ) expect_equal(called_with$query$relationship_types, "Is a,Maps to") expect_equal(called_with$query$min_score, 0.5) expect_equal(called_with$query$page_size, 50L) }) # ============================================================================== # relationships() method # ============================================================================== test_that("concepts$relationships validates concept_id", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- ConceptsResource$new(base_req) expect_error(resource$relationships("invalid")) }) test_that("concepts$relationships calls correct endpoint", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- ConceptsResource$new(base_req) called_with <- NULL local_mocked_bindings( perform_get = function(req, path, query = NULL) { called_with <<- list(path = path, query = query) list(relationships = list()) } ) resource$relationships(201826) expect_equal(called_with$path, "concepts/201826/relationships") }) test_that("concepts$relationships includes optional filters", { base_req <- httr2::request("https://api.omophub.com/v1") resource <- ConceptsResource$new(base_req) called_with <- NULL local_mocked_bindings( perform_get = function(req, path, query = NULL) { called_with <<- list(query = query) list() } ) resource$relationships( 201826, relationship_ids = "Is a", vocabulary_ids = "SNOMED", include_invalid = TRUE ) expect_equal(called_with$query$relationship_ids, "Is a") expect_equal(called_with$query$vocabulary_ids, "SNOMED") expect_equal(called_with$query$include_invalid, "true") })